Os03g0422200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0422200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 150.83 | 0.577 | 6.78 | -0.164 | 0.657 | 1.15 | -0.0954 | -0.87 | -0.391 | 4.78 | 26.3 | 11 | -- | -- |
| 152.06 | 0.574 | 6.79 | -0.273 | 0.627 | 1.23 | -0.325 | -- | -0.404 | 4.81 | 26.31 | 12 | -- | -- |
| 150.85 | 0.572 | 6.78 | -0.158 | 0.657 | 1.15 | -- | -0.912 | -0.389 | 4.78 | 26.3 | 11 | -- | -- |
| 152.32 | 0.575 | 6.8 | -0.299 | 0.645 | 1.21 | -- | -- | -0.42 | 4.85 | 26.3 | 11 | -- | -- |
| 169.09 | 0.606 | 6.78 | -0.0631 | -- | 1.55 | -- | -0.739 | -0.294 | -- | 27.31 | 13 | -- | -- |
| 173.47 | 0.617 | 6.86 | -0.593 | 0.895 | -- | -0.362 | -- | -0.687 | 3.87 | -- | -- | -- | -- |
| 173.85 | 0.617 | 6.86 | -0.588 | 0.893 | -- | -- | -- | -0.685 | 3.9 | -- | -- | -- | -- |
| 169.74 | 0.607 | 6.78 | -0.117 | -- | 1.64 | -- | -- | -0.299 | -- | 27.18 | 44 | -- | -- |
| 154.49 | 0.579 | 6.79 | -- | 0.619 | 1.33 | -- | -- | -0.369 | 4.96 | 26.32 | 12 | -- | -- |
| 217.64 | 0.689 | 6.86 | -0.551 | -- | -- | -- | -- | -0.661 | -- | -- | -- | -- | -- |
| 182.95 | 0.633 | 6.85 | -- | 0.882 | -- | -- | -- | -0.619 | 3.91 | -- | -- | -- | -- |
| 170.42 | 0.608 | 6.78 | -- | -- | 1.64 | -- | -- | -0.291 | -- | 27.17 | 44 | -- | -- |
| 225.64 | 0.701 | 6.85 | -- | -- | -- | -- | -- | -0.6 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 146.60 | temperature | 15 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 3 | 146.94 | temperature | 20 | 10 | > th | dose dependent | sin | 10 | NA |
| 5 | 146.95 | temperature | 15 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 21 | 148.57 | temperature | 20 | 30 | > th | dose dependent | rect. | 18 | 16 |
| 33 | 149.56 | temperature | 25 | 90 | > th | dose independent | rect. | 15 | 18 |
| 37 | 149.74 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 17 |
| 38 | 149.78 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 19 |
| 42 | 149.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 19 |
| 59 | 150.61 | temperature | 30 | 10 | < th | dose dependent | sin | 10 | NA |
| 76 | 151.03 | temperature | 25 | 90 | > th | dose independent | sin | 12 | NA |
| 80 | 151.10 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 18 |
| 81 | 151.11 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 20 |
| 92 | 151.24 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 106 | 151.53 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 12 |
| 124 | 151.73 | temperature | 25 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 138 | 151.81 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 141 | 151.84 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 147 | 151.89 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 149 | 151.91 | temperature | 25 | 90 | > th | dose independent | rect. | 18 | 14 |
| 159 | 151.95 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 162 | 151.97 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 168 | 151.99 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 172 | 152.02 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 173 | 152.03 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 193 | 152.15 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 210 | 152.33 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 237 | 152.51 | temperature | 25 | 1440 | > th | dose dependent | rect. | 22 | 10 |
| 261 | 152.68 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 263 | 152.69 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 21 |
| 293 | 152.96 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 11 |
| 298 | 153.00 | temperature | 25 | 720 | > th | dose independent | sin | 13 | NA |
| 306 | 153.07 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 7 |
| 316 | 153.13 | temperature | 25 | 720 | < th | dose independent | sin | 16 | NA |
| 323 | 153.18 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 335 | 153.31 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 13 |
| 337 | 153.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 7 |
| 375 | 153.55 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 14 |
| 382 | 153.59 | temperature | 25 | 90 | < th | dose independent | sin | 12 | NA |
| 448 | 153.91 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 14 |
| 476 | 153.99 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 17 |
| 483 | 154.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 9 |
| 527 | 154.22 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 18 |
| 536 | 154.25 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 11 |
| 556 | 154.30 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 11 |
| 562 | 154.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 14 |
| 565 | 154.34 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 4 |
| 645 | 154.59 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 20 |
| 650 | 154.60 | temperature | 15 | 30 | > th | dose dependent | rect. | 2 | 23 |
| 656 | 154.62 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 17 |
| 708 | 154.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 12 |
| 716 | 154.79 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 20 |
| 731 | 154.84 | temperature | 25 | 1440 | > th | dose independent | rect. | 21 | 12 |
| 741 | 154.86 | temperature | 25 | 720 | > th | dose independent | rect. | 22 | 1 |
| 778 | 154.95 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 786 | 154.97 | temperature | 25 | 270 | < th | dose dependent | rect. | 9 | 20 |
| 789 | 154.98 | temperature | 25 | 1440 | < th | dose independent | rect. | 21 | 12 |
| 817 | 155.05 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 7 |
| 833 | 155.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 16 |
| 914 | 155.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 10 |
| 974 | 155.38 | temperature | 25 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 979 | 155.39 | temperature | 20 | 30 | > th | dose independent | rect. | 13 | 23 |
| 982 | 155.39 | temperature | 15 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 992 | 155.42 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 16 |