Os03g0421800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Virulence factor, pectin lyase fold family protein.
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Os03g0421800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Virulence factor, pectin lyase fold family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 198.77 | 0.662 | 7.94 | -2.38 | 0.00535 | 2.68 | -1.45 | -6.03 | -0.515 | 17.3 | 25.8 | 988 | -- | -- |
| 207.59 | 0.671 | 7.81 | -1.26 | 0.0561 | 2.25 | 1.78 | -- | -0.34 | 6.37 | 25.12 | 935 | -- | -- |
| 203.11 | 0.664 | 7.96 | -2.46 | 0.115 | 2.67 | -- | -5.93 | -0.592 | 16.6 | 25.52 | 1042 | -- | -- |
| 213.43 | 0.68 | 7.8 | -1.2 | 0.123 | 2.08 | -- | -- | -0.285 | 16.5 | 25.5 | 1036 | -- | -- |
| 203.56 | 0.665 | 7.95 | -2.44 | -- | 2.66 | -- | -5.95 | -0.581 | -- | 25.49 | 1013 | -- | -- |
| 338.77 | 0.863 | 7.78 | -0.649 | 0.522 | -- | -0.188 | -- | -0.144 | 21.9 | -- | -- | -- | -- |
| 338.86 | 0.862 | 7.78 | -0.643 | 0.522 | -- | -- | -- | -0.144 | 22.1 | -- | -- | -- | -- |
| 213.97 | 0.681 | 7.8 | -1.2 | -- | 2.09 | -- | -- | -0.286 | -- | 25.5 | 1000 | -- | -- |
| 248.34 | 0.734 | 7.76 | -- | 0.307 | 1.57 | -- | -- | -0.0226 | 19.2 | 27.3 | 1133 | -- | -- |
| 355.28 | 0.881 | 7.77 | -0.637 | -- | -- | -- | -- | -0.143 | -- | -- | -- | -- | -- |
| 349.77 | 0.875 | 7.76 | -- | 0.519 | -- | -- | -- | -0.0723 | 22 | -- | -- | -- | -- |
| 249.37 | 0.735 | 7.76 | -- | -- | 1.86 | -- | -- | -0.0942 | -- | 26.01 | 987 | -- | -- |
| 365.98 | 0.893 | 7.75 | -- | -- | -- | -- | -- | -0.0728 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 201.57 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 3 | 203.98 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 21 |
| 13 | 205.92 | temperature | 25 | 720 | > th | dose dependent | sin | 18 | NA |
| 21 | 207.01 | temperature | 25 | 720 | > th | dose dependent | sin | 15 | NA |
| 22 | 207.03 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 13 |
| 46 | 208.86 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 125 | 210.41 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 144 | 211.29 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 165 | 212.16 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 183 | 212.90 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 191 | 213.01 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 194 | 213.16 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 220 | 214.28 | radiation | 30 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 222 | 214.30 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 232 | 214.46 | radiation | 30 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 234 | 214.47 | radiation | 30 | 4320 | < th | dose independent | rect. | 20 | 12 |
| 239 | 214.64 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 276 | 215.58 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 295 | 216.13 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 296 | 216.14 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 16 |
| 297 | 216.15 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 6 |
| 310 | 216.17 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 8 |
| 350 | 217.07 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 354 | 217.13 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 362 | 217.25 | humidity | 80 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 363 | 217.27 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 373 | 217.46 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 384 | 217.47 | radiation | 1 | 720 | > th | dose dependent | rect. | 17 | 13 |
| 391 | 217.57 | wind | 3 | 43200 | > th | dose dependent | rect. | 1 | 15 |
| 396 | 217.71 | wind | 5 | 43200 | < th | dose independent | rect. | 1 | 16 |
| 398 | 217.75 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 399 | 217.76 | wind | 5 | 43200 | < th | dose independent | rect. | 2 | 14 |
| 400 | 217.77 | wind | 5 | 43200 | > th | dose independent | rect. | 1 | 16 |
| 402 | 217.79 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 405 | 217.83 | wind | 5 | 43200 | < th | dose independent | rect. | 21 | 20 |
| 406 | 217.84 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 408 | 217.88 | wind | 5 | 43200 | > th | dose independent | rect. | 18 | 22 |
| 413 | 217.92 | wind | 5 | 43200 | > th | dose independent | rect. | 2 | 14 |
| 414 | 217.92 | wind | 5 | 43200 | < th | dose independent | rect. | 18 | 22 |
| 429 | 218.08 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 7 |
| 430 | 218.08 | wind | 5 | 43200 | > th | dose independent | rect. | 21 | 20 |
| 446 | 218.22 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 13 |
| 452 | 218.26 | wind | 5 | 43200 | > th | dose dependent | rect. | 18 | 22 |
| 465 | 218.41 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 23 |
| 469 | 218.48 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 472 | 218.52 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 482 | 218.65 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 21 |
| 483 | 218.66 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 487 | 218.72 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 501 | 218.87 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 23 |
| 518 | 219.09 | wind | 5 | 43200 | > th | dose independent | no | NA | NA |
| 524 | 219.11 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 544 | 219.23 | wind | 5 | 43200 | > th | dose dependent | rect. | 1 | 22 |
| 553 | 219.31 | wind | 5 | 43200 | < th | dose independent | sin | 2 | NA |
| 557 | 219.33 | wind | 5 | 43200 | > th | dose independent | sin | 2 | NA |
| 564 | 219.40 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 23 |
| 574 | 219.43 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 23 |
| 578 | 219.48 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 579 | 219.49 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 583 | 219.51 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 587 | 219.57 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 11 |
| 597 | 219.61 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 23 |
| 600 | 219.64 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 603 | 219.65 | wind | 5 | 43200 | < th | dose independent | no | NA | NA |
| 604 | 219.65 | wind | 3 | 43200 | > th | dose dependent | sin | 3 | NA |
| 629 | 219.80 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 23 |
| 633 | 219.81 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 23 |
| 679 | 220.13 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 681 | 220.14 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 695 | 220.25 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 719 | 220.36 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 726 | 220.42 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 743 | 220.53 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 760 | 220.62 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 23 |
| 766 | 220.64 | temperature | 25 | 1440 | > th | dose dependent | sin | 1 | NA |
| 769 | 220.65 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 821 | 220.85 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 950 | 221.30 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 991 | 221.49 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |