Os03g0419200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0419200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.29 | 0.413 | 3.13 | -0.592 | 0.0642 | -0.214 | -0.247 | 1.46 | -0.108 | 4.7 | 8.519 | 1435 | -- | -- |
| 79.98 | 0.42 | 3.12 | -0.4 | 0.438 | -0.36 | 0.0737 | -- | -0.0315 | 0.0754 | 8.519 | 1435 | -- | -- |
| 77.42 | 0.41 | 3.13 | -0.599 | 0.0711 | -0.206 | -- | 1.49 | -0.106 | 3.83 | 8.262 | 1435 | -- | -- |
| 79.64 | 0.418 | 3.12 | -0.408 | 0.462 | -0.393 | -- | -- | -0.0263 | 0.201 | 12.43 | 1482 | -- | -- |
| 77.63 | 0.41 | 3.13 | -0.588 | -- | -0.216 | -- | 1.45 | -0.103 | -- | 8.64 | 1404 | -- | -- |
| 82.06 | 0.425 | 3.11 | -0.403 | 0.0494 | -- | -0.295 | -- | -0.0231 | 5.86 | -- | -- | -- | -- |
| 82.23 | 0.425 | 3.11 | -0.406 | 0.0556 | -- | -- | -- | -0.0223 | 3.79 | -- | -- | -- | -- |
| 81.65 | 0.421 | 3.12 | -0.416 | -- | -0.169 | -- | -- | -0.0541 | -- | 7.56 | 1436 | -- | -- |
| 84.03 | 0.429 | 3.11 | -- | 0.453 | -0.39 | -- | -- | 0.0192 | 0.155 | 12.43 | 1482 | -- | -- |
| 82.4 | 0.424 | 3.11 | -0.404 | -- | -- | -- | -- | -0.0208 | -- | -- | -- | -- | -- |
| 86.58 | 0.435 | 3.1 | -- | 0.0476 | -- | -- | -- | 0.023 | 3.88 | -- | -- | -- | -- |
| 85.97 | 0.432 | 3.11 | -- | -- | -0.167 | -- | -- | -0.00724 | -- | 10 | 1461 | -- | -- |
| 86.71 | 0.435 | 3.1 | -- | -- | -- | -- | -- | 0.024 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.35 | temperature | 25 | 30 | > th | dose independent | rect. | 7 | 1 |
| 3 | 72.00 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 4 | 72.04 | humidity | 80 | 10 | < th | dose independent | rect. | 22 | 10 |
| 5 | 72.13 | humidity | 80 | 10 | < th | dose independent | rect. | 7 | 1 |
| 14 | 72.87 | radiation | 10 | 30 | > th | dose independent | rect. | 7 | 1 |
| 43 | 75.06 | humidity | 80 | 10 | < th | dose independent | rect. | 20 | 12 |
| 49 | 76.00 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 7 | 1 |
| 53 | 76.50 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 19 |
| 54 | 76.54 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 18 |
| 59 | 76.61 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 18 |
| 72 | 76.83 | wind | 7 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 77 | 76.83 | wind | 7 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 85 | 76.86 | radiation | 20 | 1440 | < th | dose dependent | sin | 12 | NA |
| 103 | 76.92 | wind | 3 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 108 | 76.97 | radiation | 1 | 1440 | > th | dose dependent | sin | 12 | NA |
| 132 | 77.08 | radiation | 10 | 1440 | > th | dose independent | sin | 11 | NA |
| 142 | 77.14 | humidity | 80 | 10 | < th | dose independent | sin | 8 | NA |
| 159 | 77.21 | radiation | 20 | 720 | < th | dose independent | rect. | 15 | 18 |
| 165 | 77.23 | radiation | 10 | 1440 | > th | dose independent | rect. | 7 | 3 |
| 181 | 77.33 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 195 | 77.40 | radiation | 10 | 1440 | < th | dose dependent | rect. | 5 | 14 |
| 206 | 77.40 | radiation | 10 | 1440 | < th | dose dependent | rect. | 1 | 19 |
| 221 | 77.41 | radiation | 10 | 1440 | < th | dose dependent | no | NA | NA |
| 267 | 77.43 | radiation | 30 | 720 | < th | dose independent | sin | 12 | NA |
| 300 | 77.48 | radiation | 30 | 1440 | < th | dose dependent | rect. | 5 | 5 |
| 302 | 77.48 | radiation | 30 | 1440 | < th | dose dependent | rect. | 24 | 10 |
| 327 | 77.53 | radiation | 20 | 720 | < th | dose independent | rect. | 8 | 1 |
| 334 | 77.54 | radiation | 1 | 1440 | > th | dose dependent | rect. | 5 | 5 |
| 363 | 77.58 | radiation | 1 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 376 | 77.59 | radiation | 30 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 409 | 77.67 | radiation | 10 | 1440 | < th | dose dependent | sin | 2 | NA |
| 412 | 77.68 | radiation | 40 | 1440 | < th | dose independent | rect. | 14 | 20 |
| 424 | 77.70 | wind | 3 | 10 | < th | dose independent | rect. | 7 | 1 |
| 439 | 77.71 | radiation | 10 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 447 | 77.73 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 6 | 21 |
| 493 | 77.78 | radiation | 40 | 720 | < th | dose independent | rect. | 17 | 17 |
| 547 | 77.87 | humidity | 90 | 90 | < th | dose independent | rect. | 20 | 15 |
| 556 | 77.87 | radiation | 40 | 90 | < th | dose dependent | rect. | 8 | 22 |
| 574 | 77.91 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 6 | 17 |
| 629 | 77.96 | humidity | 50 | 90 | > th | dose dependent | sin | 9 | NA |
| 669 | 78.01 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 6 | 11 |
| 714 | 78.04 | radiation | 40 | 90 | < th | dose independent | rect. | 8 | 22 |
| 715 | 78.04 | humidity | 80 | 90 | > th | dose dependent | sin | 8 | NA |
| 735 | 78.09 | radiation | 10 | 270 | > th | dose independent | rect. | 7 | 1 |
| 738 | 78.09 | temperature | 25 | 10 | > th | dose dependent | rect. | 22 | 10 |
| 760 | 78.11 | radiation | 20 | 1440 | < th | dose independent | rect. | 4 | 6 |
| 771 | 78.12 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 772 | 78.12 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 4 |
| 804 | 78.14 | humidity | 80 | 10 | < th | dose independent | rect. | 20 | 15 |
| 911 | 78.17 | humidity | 90 | 30 | < th | dose dependent | rect. | 20 | 12 |
| 916 | 78.17 | humidity | 90 | 90 | < th | dose dependent | rect. | 19 | 16 |
| 972 | 78.21 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 5 |