Os03g0418000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Basic endochitinase 2 precursor (EC 3.2.1.14).
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Os03g0418000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Basic endochitinase 2 precursor (EC 3.2.1.14).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 181.84 | 0.634 | 4.3 | 0.568 | 1.74 | -1.15 | -0.718 | 0.545 | -0.246 | 12.4 | 22.26 | 870 | -- | -- |
| 182.85 | 0.63 | 4.3 | 0.415 | 1.73 | -1.17 | -0.764 | -- | -0.259 | 12.4 | 22.3 | 901 | -- | -- |
| 183.84 | 0.632 | 4.3 | 0.626 | 1.74 | -1.15 | -- | 0.809 | -0.229 | 12.4 | 22.24 | 877 | -- | -- |
| 185.91 | 0.635 | 4.32 | 0.365 | 1.74 | -1.15 | -- | -- | -0.281 | 12.4 | 22.2 | 869 | -- | -- |
| 366.41 | 0.892 | 4.29 | 0.781 | -- | -1.59 | -- | 0.966 | -0.0859 | -- | 22.29 | 889 | -- | -- |
| 240.48 | 0.727 | 4.4 | 0.0192 | 1.95 | -- | -0.848 | -- | -0.677 | 12.2 | -- | -- | -- | -- |
| 243.59 | 0.731 | 4.4 | -0.0141 | 1.96 | -- | -- | -- | -0.681 | 12.2 | -- | -- | -- | -- |
| 363.8 | 0.888 | 4.3 | 0.779 | -- | -1.69 | -- | -- | -0.0418 | -- | 24.7 | 907 | -- | -- |
| 189.12 | 0.641 | 4.33 | -- | 1.75 | -1.08 | -- | -- | -0.354 | 12.4 | 22.22 | 869 | -- | -- |
| 484.14 | 1.03 | 4.44 | -0.0777 | -- | -- | -- | -- | -0.71 | -- | -- | -- | -- | -- |
| 243.6 | 0.73 | 4.4 | -- | 1.96 | -- | -- | -- | -0.679 | 12.2 | -- | -- | -- | -- |
| 367.3 | 0.893 | 4.31 | -- | -- | -1.66 | -- | -- | -0.143 | -- | 24.71 | 956 | -- | -- |
| 484.29 | 1.03 | 4.44 | -- | -- | -- | -- | -- | -0.702 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 180.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 3 | 180.42 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 4 | 180.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 7 | 181.14 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 39 | 183.95 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 40 | 183.98 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 16 |
| 46 | 184.20 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 87 | 185.53 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 213 | 187.41 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 219 | 187.44 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 22 |
| 237 | 187.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 262 | 187.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 268 | 188.02 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 329 | 188.61 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 350 | 188.70 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 384 | 188.92 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 390 | 188.96 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 415 | 189.17 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 10 |
| 432 | 189.27 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 9 |
| 459 | 189.39 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 489 | 189.54 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 497 | 189.59 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 19 |
| 520 | 189.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 524 | 189.75 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 554 | 189.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 569 | 189.92 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 651 | 190.28 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 688 | 190.36 | temperature | 15 | 1440 | > th | dose dependent | sin | 14 | NA |
| 695 | 190.39 | temperature | 30 | 1440 | < th | dose dependent | sin | 14 | NA |
| 894 | 190.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 932 | 191.12 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |