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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0414900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0219) R2 : 0.0663
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.263 (0.0462) R2dN8 : 0.0857 R2N8 : 0.0663
σ : 0.413
deviance : 78.43
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
51.75 0.338 2.94 -0.132 0.0505 1.09 -0.228 -5.62 0.0575 1.19 25.03 293 1.19 1.03
56.25 0.349 2.93 0.0537 0.0553 1.29 -0.333 -- 0.106 1.23 25.02 231 1.17 1.12
51.96 0.336 2.94 -0.125 0.0498 1.09 -- -5.67 0.0577 1.6 25.02 291 1.2 1.03
56.64 0.351 2.93 0.0613 0.058 1.33 -- -- 0.0977 2.75 25.01 230 1.17 1.1
52.11 0.336 2.93 -0.125 -- 1.11 -- -5.72 0.0553 -- 25.02 290 1.21 1.05
74.41 0.404 2.9 0.0626 0.233 -- -0.543 -- 0.263 3.64 -- -- -- --
75.3 0.406 2.89 0.0713 0.231 -- -- -- 0.266 3.74 -- -- -- --
56.84 0.351 2.93 0.0624 -- 1.36 -- -- 0.0974 -- 25.02 230 1.16 1.1
56.74 0.351 2.93 -- 0.0614 1.33 -- -- 0.0937 2.88 25 230 1.16 1.1
78.25 0.413 2.89 0.0809 -- -- -- -- 0.272 -- -- -- -- --
75.44 0.406 2.9 -- 0.232 -- -- -- 0.258 3.73 -- -- -- --
56.94 0.351 2.94 -- -- 1.36 -- -- 0.0903 -- 25.02 231 1.14 1.12
78.43 0.413 2.9 -- -- -- -- -- 0.263 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 51.92 temperature 25.0 270 > th dose independent rect. 1 1
4 51.93 temperature 25.0 270 > th dose dependent rect. 2 1
7 52.01 temperature 25.0 90 > th dose dependent rect. 1 4
10 52.58 temperature 25.0 90 > th dose independent rect. 1 4
33 58.88 atmosphere 1005.0 30 > th dose dependent rect. 2 3
42 60.00 temperature 25.0 1440 < th dose independent rect. 1 1
48 60.44 atmosphere 1005.0 270 > th dose dependent rect. 1 1
75 62.10 wind 1.0 30 < th dose independent rect. 2 1
79 62.17 wind 3.0 30 < th dose dependent rect. 2 1
80 62.19 atmosphere 1005.0 30 > th dose dependent rect. 2 1
89 62.24 humidity 90.0 30 > th dose independent rect. 2 1
90 62.24 wind 9.0 30 < th dose independent rect. 3 23
92 62.24 humidity 80.0 30 > th dose dependent rect. 2 1
100 62.26 atmosphere 1005.0 30 > th dose independent rect. 2 1
101 62.26 humidity 50.0 30 > th dose dependent rect. 2 1
104 62.27 temperature 10.0 30 > th dose independent rect. 2 1
106 62.27 temperature 25.0 30 < th dose independent rect. 2 1
108 62.27 humidity 50.0 30 > th dose independent rect. 2 1
111 62.27 atmosphere 995.0 30 > th dose independent rect. 2 1
113 62.27 atmosphere 1010.0 30 < th dose independent rect. 2 1
115 62.27 radiation 1.0 30 < th dose independent rect. 2 1
120 62.27 precipitation 0.1 30 < th dose independent rect. 2 1
121 62.27 temperature 10.0 30 > th dose independent rect. 3 23
122 62.27 radiation 1.0 30 < th dose dependent rect. 2 1
127 62.27 precipitation 0.1 30 < th dose dependent rect. 2 1
130 62.34 atmosphere 1015.0 30 < th dose dependent rect. 2 1
132 62.37 temperature 30.0 30 < th dose dependent rect. 2 1
150 62.62 wind 1.0 30 > th dose independent rect. 2 1
154 62.62 humidity 80.0 4320 < th dose dependent rect. 1 1
185 62.73 atmosphere 995.0 30 > th dose independent rect. 3 23
186 62.74 precipitation 0.1 30 < th dose independent rect. 3 23
187 62.74 precipitation 0.1 30 < th dose dependent rect. 3 23
218 63.36 radiation 10.0 14400 < th dose dependent rect. 3 1
219 63.37 wind 9.0 1440 < th dose independent rect. 3 1
220 63.37 temperature 10.0 1440 > th dose independent rect. 3 1
223 63.37 temperature 30.0 1440 < th dose independent rect. 3 1
227 63.37 humidity 50.0 1440 > th dose independent rect. 3 1
236 63.37 atmosphere 995.0 1440 > th dose independent rect. 3 1
237 63.37 radiation 1.0 1440 < th dose independent rect. 3 1
257 63.37 temperature 10.0 1440 > th dose independent rect. 4 23
260 63.37 radiation 1.0 1440 < th dose dependent rect. 3 1
328 64.51 temperature 20.0 10 > th dose independent rect. 2 3
336 64.63 humidity 80.0 4320 < th dose dependent rect. 22 5
344 64.83 humidity 50.0 30 > th dose independent rect. 3 23
358 65.05 wind 1.0 10 > th dose independent rect. 5 23
377 65.33 atmosphere 1005.0 30 > th dose independent rect. 2 3
388 65.39 humidity 90.0 270 < th dose independent rect. 1 1
389 65.43 humidity 80.0 4320 < th dose independent rect. 1 1
391 65.46 atmosphere 1005.0 30 > th dose dependent rect. 4 1
394 65.48 temperature 25.0 720 < th dose independent rect. 21 8
398 65.51 temperature 20.0 30 > th dose dependent rect. 4 1
399 65.53 wind 7.0 1440 < th dose independent rect. 5 1
401 65.53 temperature 10.0 1440 > th dose independent rect. 5 1
404 65.53 temperature 30.0 1440 < th dose independent rect. 5 1
408 65.53 humidity 50.0 1440 > th dose independent rect. 5 1
417 65.53 atmosphere 995.0 1440 > th dose independent rect. 5 1
418 65.53 atmosphere 1015.0 1440 < th dose independent rect. 5 1
419 65.53 radiation 20.0 1440 < th dose independent rect. 5 1
428 65.53 temperature 10.0 1440 > th dose independent rect. 6 23
433 65.54 atmosphere 1005.0 30 > th dose independent rect. 4 1
434 65.55 humidity 80.0 4320 > th dose independent rect. 1 1
437 65.57 temperature 25.0 720 < th dose independent rect. 21 5
443 65.58 temperature 20.0 30 > th dose independent rect. 4 1
452 65.61 wind 5.0 30 < th dose independent rect. 4 1
458 65.63 wind 1.0 30 > th dose independent rect. 4 1
460 65.64 temperature 10.0 30 > th dose independent rect. 4 1
462 65.64 temperature 30.0 30 < th dose independent rect. 4 1
463 65.64 humidity 50.0 30 > th dose independent rect. 4 1
467 65.64 atmosphere 1010.0 30 < th dose independent rect. 4 1
469 65.64 radiation 1.0 30 < th dose independent rect. 4 1
474 65.64 temperature 10.0 30 > th dose independent rect. 5 23
475 65.64 wind 7.0 30 < th dose dependent rect. 4 1
477 65.64 radiation 1.0 30 < th dose dependent rect. 4 1
484 65.65 precipitation 0.1 30 < th dose independent rect. 4 1
487 65.65 precipitation 0.1 30 < th dose dependent rect. 4 1
492 65.66 humidity 50.0 30 > th dose dependent rect. 4 1
509 65.78 atmosphere 1015.0 30 < th dose dependent rect. 4 1
510 65.79 humidity 90.0 10 < th dose independent rect. 4 1
527 65.89 temperature 30.0 30 < th dose dependent rect. 4 1
528 65.90 temperature 25.0 720 > th dose independent rect. 18 11
536 65.92 humidity 80.0 4320 < th dose independent rect. 22 5
539 65.93 wind 9.0 30 < th dose independent rect. 5 23
582 66.11 wind 1.0 30 > th dose dependent rect. 4 1
601 66.18 wind 3.0 30 < th dose dependent rect. 2 3
608 66.21 atmosphere 995.0 30 > th dose independent rect. 5 23
673 66.46 humidity 80.0 4320 < th dose dependent rect. 22 1
691 66.57 precipitation 0.1 30 < th dose independent rect. 5 23
692 66.57 precipitation 0.1 30 < th dose dependent rect. 5 23
699 66.63 humidity 90.0 90 < th dose dependent rect. 4 1
724 66.78 temperature 20.0 30 > th dose dependent rect. 22 7
792 67.20 humidity 90.0 10 < th dose dependent rect. 4 1
805 67.31 atmosphere 1015.0 30 < th dose independent rect. 3 23
832 67.46 temperature 25.0 720 > th dose independent sin 12 NA
852 67.56 wind 9.0 30 < th dose independent rect. 5 21
858 67.59 temperature 25.0 720 < th dose independent sin 12 NA
866 67.64 precipitation 0.1 30 < th dose independent rect. 2 3
867 67.64 precipitation 0.1 30 < th dose dependent rect. 2 3
873 67.68 wind 3.0 720 < th dose independent rect. 2 1
886 67.71 temperature 25.0 270 < th dose independent sin 10 NA
888 67.71 atmosphere 995.0 30 > th dose independent rect. 5 21
890 67.72 humidity 80.0 30 > th dose independent rect. 2 3
896 67.74 temperature 10.0 30 > th dose independent rect. 2 3
898 67.74 temperature 30.0 30 < th dose independent rect. 2 3
899 67.74 humidity 50.0 30 > th dose independent rect. 2 3
902 67.74 atmosphere 995.0 30 > th dose independent rect. 2 3
903 67.74 atmosphere 1010.0 30 < th dose independent rect. 2 3
905 67.74 radiation 1.0 30 < th dose independent rect. 2 3
913 67.74 temperature 10.0 30 > th dose independent rect. 5 21
914 67.74 radiation 30.0 30 < th dose dependent rect. 2 3
921 67.75 radiation 10.0 30 < th dose dependent rect. 2 3
923 67.76 precipitation 0.1 30 < th dose independent rect. 5 21
926 67.76 precipitation 0.1 30 < th dose dependent rect. 5 21
952 67.87 temperature 30.0 30 < th dose independent rect. 3 23