Os03g0414400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0414400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.49 | 0.374 | 11.3 | -0.877 | 0.89 | -0.588 | 0.484 | -0.118 | -0.642 | 20.8 | 24.6 | 236 | -- | -- |
| 63.54 | 0.371 | 11.3 | -0.913 | 0.885 | -0.597 | 0.495 | -- | -0.654 | 20.8 | 24.53 | 242 | -- | -- |
| 64.27 | 0.373 | 11.3 | -0.881 | 0.889 | -0.587 | -- | -0.154 | -0.637 | 20.8 | 24.6 | 235 | -- | -- |
| 64.35 | 0.374 | 11.3 | -0.931 | 0.887 | -0.597 | -- | -- | -0.656 | 20.8 | 24.58 | 235 | -- | -- |
| 97.83 | 0.461 | 11.3 | -0.84 | -- | -0.818 | -- | -0.284 | -0.654 | -- | 25 | 369 | -- | -- |
| 82.84 | 0.427 | 11.3 | -0.722 | 1.09 | -- | 0.63 | -- | -0.344 | 19.7 | -- | -- | -- | -- |
| 83.97 | 0.429 | 11.3 | -0.738 | 1.09 | -- | -- | -- | -0.343 | 19.7 | -- | -- | -- | -- |
| 96.2 | 0.457 | 11.3 | -1 | -- | -0.909 | -- | -- | -0.695 | -- | 25.1 | 472 | -- | -- |
| 86.12 | 0.432 | 11.3 | -- | 0.931 | -0.46 | -- | -- | -0.486 | 20.4 | 24.53 | 235 | -- | -- |
| 148.45 | 0.569 | 11.2 | -0.752 | -- | -- | -- | -- | -0.359 | -- | -- | -- | -- | -- |
| 98.33 | 0.464 | 11.2 | -- | 1.1 | -- | -- | -- | -0.261 | 19.7 | -- | -- | -- | -- |
| 122.21 | 0.515 | 11.3 | -- | -- | -0.813 | -- | -- | -0.595 | -- | 25.2 | 411 | -- | -- |
| 163.37 | 0.597 | 11.2 | -- | -- | -- | -- | -- | -0.276 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.03 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 3 | 62.52 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 20 |
| 14 | 63.67 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 21 |
| 38 | 64.78 | temperature | 25 | 270 | < th | dose independent | rect. | 21 | 23 |
| 43 | 64.99 | temperature | 25 | 270 | < th | dose independent | rect. | 18 | 23 |
| 52 | 65.14 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 23 |
| 61 | 65.37 | temperature | 25 | 270 | < th | dose independent | rect. | 14 | 23 |
| 62 | 65.39 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 66 | 65.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 87 | 65.68 | temperature | 25 | 270 | < th | dose independent | sin | 7 | NA |
| 110 | 66.11 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 122 | 66.24 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 126 | 66.28 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 19 |
| 127 | 66.28 | temperature | 25 | 270 | < th | dose independent | rect. | 10 | 23 |
| 139 | 66.41 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 12 |
| 143 | 66.44 | temperature | 25 | 270 | > th | dose independent | rect. | 12 | 23 |
| 144 | 66.46 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 23 |
| 145 | 66.47 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 15 |
| 154 | 66.53 | temperature | 25 | 270 | > th | dose independent | rect. | 3 | 23 |
| 172 | 66.67 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 182 | 66.77 | temperature | 25 | 270 | > th | dose independent | sin | 7 | NA |
| 218 | 67.13 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 10 |
| 237 | 67.28 | temperature | 25 | 270 | > th | dose independent | rect. | 15 | 23 |
| 258 | 67.42 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 23 |
| 261 | 67.45 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 13 |
| 298 | 67.65 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 6 | 23 |
| 301 | 67.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 340 | 67.86 | temperature | 20 | 270 | > th | dose dependent | sin | 7 | NA |
| 376 | 68.05 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 382 | 68.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 20 |
| 389 | 68.12 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 15 |
| 403 | 68.16 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 407 | 68.18 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 450 | 68.40 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 4 | 19 |
| 482 | 68.55 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 486 | 68.56 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 494 | 68.57 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 495 | 68.59 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 497 | 68.60 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 517 | 68.66 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 14 |
| 526 | 68.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 5 |
| 552 | 68.79 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 559 | 68.80 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 12 |
| 633 | 69.01 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 2 |
| 638 | 69.03 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 654 | 69.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 656 | 69.07 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 698 | 69.18 | atmosphere | 1000 | 90 | > th | dose dependent | rect. | 11 | 12 |
| 763 | 69.36 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 13 |
| 803 | 69.46 | temperature | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 811 | 69.48 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 19 |
| 834 | 69.53 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 879 | 69.63 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 3 |
| 950 | 69.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 3 |
| 996 | 69.87 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 999 | 69.88 | atmosphere | 1005 | 720 | > th | dose dependent | rect. | 11 | 2 |