Os03g0413100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ACR4.
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Os03g0413100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ACR4.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 165.41 | 0.604 | 9.43 | 0.391 | 1.76 | -1.17 | -0.213 | 0.556 | -0.367 | 8.17 | 20.23 | 1414 | -- | -- |
| 165.99 | 0.6 | 9.44 | 0.282 | 1.76 | -1.22 | -0.198 | -- | -0.392 | 8.15 | 20.2 | 1384 | -- | -- |
| 165.55 | 0.599 | 9.43 | 0.383 | 1.76 | -1.16 | -- | 0.557 | -0.368 | 8.16 | 20.27 | 1401 | -- | -- |
| 166.06 | 0.6 | 9.44 | 0.286 | 1.75 | -1.23 | -- | -- | -0.386 | 8.15 | 20.4 | 1370 | -- | -- |
| 309.12 | 0.819 | 9.44 | 0.432 | -- | -1.24 | -- | 0.667 | -0.266 | -- | 20.7 | 629 | -- | -- |
| 197.95 | 0.66 | 9.5 | -0.212 | 1.75 | -- | -0.0771 | -- | -0.652 | 8.26 | -- | -- | -- | -- |
| 197.96 | 0.659 | 9.5 | -0.214 | 1.75 | -- | -- | -- | -0.651 | 8.26 | -- | -- | -- | -- |
| 309.9 | 0.82 | 9.48 | 0.28 | -- | -1.33 | -- | -- | -0.321 | -- | 20.73 | 628 | -- | -- |
| 167.86 | 0.603 | 9.45 | -- | 1.76 | -1.13 | -- | -- | -0.43 | 8.14 | 20.34 | 1362 | -- | -- |
| 367.5 | 0.896 | 9.55 | -0.202 | -- | -- | -- | -- | -0.632 | -- | -- | -- | -- | -- |
| 199.17 | 0.66 | 9.5 | -- | 1.75 | -- | -- | -- | -0.628 | 8.27 | -- | -- | -- | -- |
| 311.79 | 0.822 | 9.49 | -- | -- | -1.24 | -- | -- | -0.368 | -- | 20.8 | 628 | -- | -- |
| 368.58 | 0.896 | 9.54 | -- | -- | -- | -- | -- | -0.61 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 156.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 6 |
| 7 | 156.62 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 6 |
| 12 | 156.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 18 | 156.93 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 29 | 157.38 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 31 | 157.54 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 32 | 157.54 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 35 | 157.66 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 46 | 157.88 | wind | 7 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 62 | 158.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 63 | 158.65 | wind | 7 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 69 | 159.08 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 71 | 159.16 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 75 | 159.22 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 112 | 159.96 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 122 | 160.13 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 123 | 160.13 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 126 | 160.19 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 132 | 160.24 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 152 | 160.50 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 166 | 160.72 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 233 | 161.74 | wind | 7 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 237 | 161.79 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 257 | 162.17 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 269 | 162.28 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 293 | 162.47 | radiation | 30 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 298 | 162.52 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 300 | 162.58 | radiation | 30 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 313 | 162.71 | radiation | 30 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 314 | 162.71 | humidity | 70 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 347 | 162.87 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 360 | 163.04 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 387 | 163.19 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 390 | 163.20 | humidity | 60 | 14400 | > th | dose dependent | rect. | 2 | 5 |
| 392 | 163.22 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 400 | 163.27 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 420 | 163.47 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 441 | 163.69 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 508 | 164.24 | humidity | 70 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 534 | 164.47 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 541 | 164.49 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 14 |
| 561 | 164.70 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 572 | 164.80 | humidity | 90 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 608 | 165.08 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 16 |
| 635 | 165.26 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 17 | NA |
| 636 | 165.27 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 638 | 165.27 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 640 | 165.27 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 651 | 165.27 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 693 | 165.27 | humidity | 60 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 697 | 165.27 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 751 | 165.33 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 765 | 165.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 768 | 165.51 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 17 |
| 776 | 165.55 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 787 | 165.59 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 21 |
| 796 | 165.65 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 23 | 16 |
| 799 | 165.67 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 18 | 21 |
| 802 | 165.68 | wind | 5 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 807 | 165.72 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 814 | 165.73 | wind | 5 | 43200 | < th | dose dependent | rect. | 22 | 9 |
| 835 | 165.83 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 841 | 165.85 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 843 | 165.85 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 854 | 165.90 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 11 |
| 864 | 165.96 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 865 | 165.96 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 22 | 17 |
| 886 | 166.06 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 891 | 166.09 | atmosphere | 995 | 43200 | > th | dose independent | sin | 5 | NA |
| 893 | 166.09 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 904 | 166.14 | humidity | 80 | 1440 | < th | dose dependent | rect. | 1 | 13 |
| 913 | 166.18 | humidity | 80 | 1440 | < th | dose dependent | rect. | 5 | 9 |
| 919 | 166.20 | humidity | 80 | 1440 | < th | dose dependent | rect. | 21 | 17 |
| 922 | 166.22 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 926 | 166.24 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 935 | 166.29 | humidity | 80 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 950 | 166.36 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 20 |
| 956 | 166.38 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 979 | 166.50 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 981 | 166.51 | atmosphere | 995 | 43200 | < th | dose independent | sin | 5 | NA |
| 998 | 166.55 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 1 |