Os03g0410900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Like-Sm ribonucleoprotein, core family protein.
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Os03g0410900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Like-Sm ribonucleoprotein, core family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.95 | 0.455 | 11 | -0.459 | 1.73 | 0.192 | 0.679 | -6.02 | -0.0911 | 18.4 | 31.31 | 1229 | -- | -- |
| 94.87 | 0.454 | 10.9 | 0.506 | 1.75 | -0.49 | 0.721 | -- | -0.0663 | 18.4 | 33.09 | 1189 | -- | -- |
| 94.95 | 0.454 | 11 | -0.405 | 1.73 | 0.164 | -- | -5.8 | -0.0827 | 18.3 | 32.1 | 1232 | -- | -- |
| 96.08 | 0.457 | 10.9 | 0.491 | 1.74 | -0.493 | -- | -- | -0.0749 | 18.4 | 33.1 | 1193 | -- | -- |
| 250.2 | 0.737 | 11 | -0.49 | -- | 0.12 | -- | -5.98 | -0.142 | -- | 32.04 | 1292 | -- | -- |
| 106.76 | 0.484 | 10.8 | 0.393 | 1.76 | -- | 0.752 | -- | 0.000314 | 18.2 | -- | -- | -- | -- |
| 108.15 | 0.487 | 10.8 | 0.384 | 1.77 | -- | -- | -- | 0.00298 | 18.2 | -- | -- | -- | -- |
| 252.05 | 0.739 | 10.9 | 0.404 | -- | -0.408 | -- | -- | -0.148 | -- | 33.57 | 6941 | -- | -- |
| 102.43 | 0.471 | 10.9 | -- | 1.75 | -0.456 | -- | -- | -0.128 | 18.3 | 33.53 | 1188 | -- | -- |
| 269.87 | 0.768 | 10.8 | 0.336 | -- | -- | -- | -- | -0.0358 | -- | -- | -- | -- | -- |
| 112.04 | 0.495 | 10.9 | -- | 1.76 | -- | -- | -- | -0.0398 | 18.2 | -- | -- | -- | -- |
| 256.4 | 0.746 | 10.8 | -- | -- | -0.405 | -- | -- | -0.105 | -- | 33.64 | 6953 | -- | -- |
| 272.85 | 0.771 | 10.8 | -- | -- | -- | -- | -- | -0.073 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 91.45 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 9 |
| 6 | 91.80 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 21 | 4 |
| 18 | 92.36 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 18 | 13 |
| 31 | 92.96 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 20 | 8 |
| 34 | 93.17 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 20 | 8 |
| 35 | 93.22 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 19 | 7 |
| 44 | 93.62 | radiation | 40.0 | 10 | < th | dose independent | rect. | 4 | 16 |
| 47 | 93.72 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 20 | 7 |
| 55 | 93.93 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 22 | 6 |
| 61 | 94.15 | wind | 7.0 | 10 | < th | dose dependent | rect. | 4 | 5 |
| 70 | 94.34 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 20 | 8 |
| 72 | 94.37 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 73 | 94.39 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 96 | 94.57 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 4 | 5 |
| 99 | 94.62 | wind | 5.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 104 | 94.68 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 123 | 94.71 | temperature | 25.0 | 720 | > th | dose dependent | sin | 12 | NA |
| 125 | 94.73 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 19 |
| 149 | 94.85 | wind | 7.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 152 | 94.88 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 15 | 16 |
| 159 | 94.94 | temperature | 25.0 | 10 | < th | dose independent | rect. | 22 | 6 |
| 160 | 94.96 | temperature | 25.0 | 90 | < th | dose independent | rect. | 23 | 4 |
| 165 | 94.99 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 200 | 95.11 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 4 | 5 |
| 201 | 95.11 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 203 | 95.11 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 4 | 5 |
| 212 | 95.18 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 17 | 15 |
| 217 | 95.21 | wind | 5.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 222 | 95.23 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 18 | 15 |
| 224 | 95.24 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 7 |
| 227 | 95.25 | temperature | 10.0 | 10 | > th | dose independent | rect. | 4 | 5 |
| 229 | 95.25 | temperature | 30.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 230 | 95.25 | humidity | 50.0 | 10 | > th | dose independent | rect. | 4 | 5 |
| 232 | 95.25 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 4 | 5 |
| 233 | 95.25 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 234 | 95.25 | temperature | 10.0 | 10 | > th | dose independent | rect. | 9 | 19 |
| 264 | 95.33 | temperature | 20.0 | 30 | > th | dose independent | rect. | 15 | 18 |
| 296 | 95.44 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 298 | 95.45 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 15 | 18 |
| 313 | 95.50 | wind | 5.0 | 270 | < th | dose independent | rect. | 1 | 7 |
| 326 | 95.56 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 347 | 95.60 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 1 |
| 348 | 95.61 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 9 | 19 |
| 350 | 95.61 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 9 | 19 |
| 367 | 95.66 | temperature | 15.0 | 90 | > th | dose independent | rect. | 9 | 18 |
| 392 | 95.73 | wind | 9.0 | 10 | < th | dose independent | rect. | 20 | 8 |
| 397 | 95.74 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 6 |
| 398 | 95.74 | temperature | 10.0 | 10 | > th | dose independent | rect. | 20 | 8 |
| 399 | 95.74 | temperature | 30.0 | 10 | < th | dose independent | rect. | 20 | 8 |
| 400 | 95.74 | humidity | 50.0 | 10 | > th | dose independent | rect. | 20 | 8 |
| 404 | 95.74 | radiation | 1.0 | 10 | < th | dose independent | rect. | 20 | 8 |
| 409 | 95.74 | temperature | 10.0 | 10 | > th | dose independent | rect. | 4 | 16 |
| 411 | 95.74 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 4 | 16 |
| 412 | 95.74 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 9 | 19 |
| 413 | 95.74 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 415 | 95.74 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 20 | 8 |
| 424 | 95.75 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 24 | 9 |
| 455 | 95.84 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 9 |
| 456 | 95.84 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 4 | 16 |
| 458 | 95.84 | humidity | 50.0 | 10 | > th | dose independent | rect. | 9 | 19 |
| 460 | 95.84 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 475 | 95.88 | radiation | 40.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 487 | 95.88 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 517 | 95.94 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 4 | 5 |
| 526 | 95.96 | temperature | 25.0 | 270 | < th | dose independent | rect. | 23 | 1 |
| 527 | 95.96 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 19 | 7 |
| 530 | 95.98 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 16 |
| 532 | 95.98 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 561 | 96.03 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 8 |
| 564 | 96.04 | temperature | 30.0 | 1440 | > th | dose dependent | no | NA | NA |
| 656 | 96.05 | temperature | 15.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 670 | 96.08 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 6 |
| 672 | 96.08 | radiation | 30.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 678 | 96.09 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 679 | 96.09 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 20 | 8 |
| 681 | 96.10 | temperature | 25.0 | 720 | > th | dose independent | rect. | 20 | 4 |
| 707 | 96.12 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 714 | 96.13 | wind | 9.0 | 10 | < th | dose dependent | rect. | 20 | 8 |
| 722 | 96.15 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 15 |
| 730 | 96.16 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 13 |
| 739 | 96.19 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 23 | 1 |
| 771 | 96.23 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 23 |
| 850 | 96.33 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 7 |
| 852 | 96.33 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 7 |
| 865 | 96.36 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 867 | 96.37 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 20 | 8 |
| 870 | 96.37 | wind | 9.0 | 10 | < th | dose independent | rect. | 4 | 16 |
| 874 | 96.37 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 20 | 8 |
| 875 | 96.38 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 15 |
| 876 | 96.38 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 20 | 17 |
| 877 | 96.38 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 883 | 96.40 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 889 | 96.41 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 907 | 96.43 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 908 | 96.43 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 909 | 96.43 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 911 | 96.43 | radiation | 1.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 922 | 96.43 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 16 |
| 923 | 96.43 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 929 | 96.43 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 934 | 96.44 | temperature | 30.0 | 1440 | > th | dose independent | sin | 13 | NA |
| 982 | 96.46 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 24 | 10 |
| 985 | 96.47 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 986 | 96.47 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 993 | 96.48 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 7 |