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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0410000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Homeodomain-related containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.07 (0.0234) R2 : 0.0124
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.118 (0.0493) R2dN8 : 0.016 R2N8 : 0.0124
σ : 0.441
deviance : 89.4
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
86.72 0.438 3.08 0.0951 0.148 0.168 -0.329 0.72 0.0957 5.27 89 5905 -- --
87.43 0.436 3.08 0.0537 0.144 0.192 -0.359 -- 0.0795 5.2 97.03 5742 -- --
86.97 0.434 3.08 0.103 0.15 0.175 -- 0.734 0.0938 5.64 91 5957 -- --
87.62 0.436 3.08 0.0613 0.147 0.178 -- -- 0.0904 5.79 89 10302 -- --
88.09 0.437 3.08 0.103 -- 0.178 -- 0.716 0.0974 -- 90.81 5787 -- --
87.94 0.44 3.07 0.0396 0.148 -- -0.339 -- 0.118 5.23 -- -- -- --
88.21 0.44 3.07 0.0398 0.147 -- -- -- 0.119 5.66 -- -- -- --
88.77 0.439 3.08 0.069 -- 0.184 -- -- 0.0939 -- 91.1 10110 -- --
87.73 0.436 3.08 -- 0.152 0.18 -- -- 0.0866 5.69 89 10393 -- --
89.34 0.442 3.07 0.0445 -- -- -- -- 0.123 -- -- -- -- --
88.26 0.439 3.07 -- 0.148 -- -- -- 0.115 5.64 -- -- -- --
88.89 0.439 3.08 -- -- 0.177 -- -- 0.0824 -- 91 10095 -- --
89.4 0.441 3.07 -- -- -- -- -- 0.118 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 82.03 atmosphere 995.0 720 > th dose independent rect. 23 16
2 82.16 temperature 10.0 720 > th dose independent rect. 15 8
3 82.16 temperature 10.0 720 > th dose independent rect. 23 16
4 82.28 temperature 10.0 720 > th dose independent rect. 3 8
5 82.28 atmosphere 995.0 720 > th dose independent rect. 3 8
6 82.28 temperature 10.0 720 > th dose independent rect. 11 16
7 82.30 precipitation 0.1 720 < th dose independent rect. 15 8
8 82.30 precipitation 0.1 720 < th dose dependent rect. 15 8
9 82.41 humidity 50.0 720 > th dose independent rect. 3 8
10 82.56 wind 9.0 720 < th dose independent rect. 3 8
11 82.75 precipitation 0.1 720 < th dose independent rect. 11 16
12 82.75 precipitation 0.1 720 < th dose dependent rect. 11 16
13 82.88 atmosphere 1005.0 90 > th dose dependent rect. 2 1
14 83.02 radiation 40.0 720 < th dose independent rect. 15 8
15 83.07 atmosphere 995.0 720 > th dose independent rect. 15 8
16 83.07 atmosphere 1000.0 30 > th dose independent rect. 3 23
17 83.14 atmosphere 995.0 720 > th dose independent rect. 11 16
18 83.20 radiation 1.0 4320 < th dose dependent rect. 3 1
30 83.26 wind 9.0 1440 < th dose independent rect. 3 1
31 83.26 temperature 10.0 1440 > th dose independent rect. 3 1
34 83.26 temperature 30.0 1440 < th dose independent rect. 3 1
38 83.26 humidity 50.0 1440 > th dose independent rect. 3 1
47 83.26 atmosphere 995.0 1440 > th dose independent rect. 3 1
48 83.26 radiation 1.0 1440 < th dose independent rect. 3 1
68 83.26 temperature 10.0 1440 > th dose independent rect. 4 23
79 83.27 temperature 20.0 30 > th dose dependent rect. 2 1
80 83.29 temperature 20.0 30 > th dose independent rect. 2 1
83 83.31 atmosphere 1005.0 30 > th dose independent rect. 2 1
88 83.34 wind 3.0 30 < th dose independent rect. 2 1
90 83.34 wind 3.0 30 < th dose dependent rect. 2 1
97 83.36 humidity 80.0 30 > th dose independent rect. 2 1
99 83.36 humidity 60.0 30 > th dose dependent rect. 2 1
103 83.37 temperature 10.0 30 > th dose independent rect. 2 1
105 83.37 temperature 30.0 30 < th dose independent rect. 2 1
106 83.37 humidity 50.0 30 > th dose independent rect. 2 1
110 83.37 atmosphere 1010.0 30 < th dose independent rect. 2 1
112 83.37 radiation 1.0 30 < th dose independent rect. 2 1
117 83.37 precipitation 0.1 30 < th dose independent rect. 2 1
118 83.37 temperature 10.0 30 > th dose independent rect. 3 23
120 83.37 radiation 1.0 30 < th dose dependent rect. 2 1
125 83.37 precipitation 0.1 30 < th dose dependent rect. 2 1
132 83.46 atmosphere 1015.0 30 < th dose dependent rect. 2 1
133 83.49 wind 1.0 30 > th dose independent rect. 2 1
137 83.51 temperature 30.0 30 < th dose dependent rect. 2 1
139 83.52 atmosphere 1015.0 720 < th dose independent rect. 3 8
156 83.67 precipitation 0.1 30 < th dose independent rect. 3 23
158 83.67 temperature 25.0 90 > th dose dependent rect. 1 5
159 83.67 precipitation 0.1 30 < th dose dependent rect. 3 23
192 83.77 atmosphere 995.0 720 > th dose independent rect. 7 8
198 83.84 precipitation 0.1 720 < th dose independent rect. 19 8
199 83.84 precipitation 0.1 720 < th dose dependent rect. 19 8
201 83.89 temperature 25.0 30 > th dose dependent rect. 22 1
202 83.92 wind 9.0 4320 < th dose independent rect. 23 1
203 83.92 humidity 90.0 30 < th dose dependent rect. 22 1
204 83.94 humidity 90.0 30 < th dose independent rect. 22 1
206 83.95 temperature 25.0 30 > th dose independent rect. 22 1
207 83.95 temperature 10.0 1440 > th dose independent rect. 23 1
210 83.95 temperature 30.0 1440 < th dose independent rect. 23 1
214 83.95 humidity 50.0 1440 > th dose independent rect. 23 1
224 83.95 atmosphere 995.0 1440 > th dose independent rect. 23 1
225 83.95 radiation 1.0 1440 < th dose independent rect. 23 1
245 83.95 precipitation 0.1 720 < th dose independent rect. 3 8
246 83.95 temperature 10.0 1440 > th dose independent rect. 24 23
250 83.95 radiation 1.0 1440 < th dose dependent rect. 23 1
255 83.95 precipitation 0.1 720 < th dose dependent rect. 3 8
257 83.96 wind 9.0 30 < th dose independent rect. 23 23
260 83.97 atmosphere 1005.0 30 > th dose independent rect. 22 1
261 83.97 wind 1.0 720 > th dose independent rect. 15 8
262 83.97 temperature 10.0 30 > th dose dependent rect. 22 1
264 83.97 atmosphere 1005.0 30 > th dose dependent rect. 22 1
265 83.98 wind 1.0 30 > th dose independent rect. 22 1
267 83.99 wind 5.0 30 < th dose independent rect. 22 1
270 83.99 temperature 10.0 30 > th dose independent rect. 22 1
272 83.99 temperature 30.0 30 < th dose independent rect. 22 1
273 83.99 humidity 50.0 30 > th dose independent rect. 22 1
277 83.99 atmosphere 995.0 30 > th dose independent rect. 22 1
278 83.99 atmosphere 1010.0 30 < th dose independent rect. 22 1
280 83.99 radiation 1.0 30 < th dose independent rect. 22 1
285 83.99 precipitation 0.1 30 < th dose independent rect. 22 1
286 83.99 temperature 10.0 30 > th dose independent rect. 23 23
287 83.99 wind 1.0 30 > th dose dependent rect. 22 1
289 83.99 radiation 1.0 30 < th dose dependent rect. 22 1
294 83.99 precipitation 0.1 30 < th dose dependent rect. 22 1
296 84.00 wind 9.0 720 < th dose independent rect. 19 8
298 84.00 wind 9.0 30 < th dose dependent rect. 22 1
300 84.01 atmosphere 995.0 720 > th dose independent rect. 3 16
306 84.02 humidity 50.0 30 > th dose dependent rect. 22 1
309 84.04 temperature 10.0 720 > th dose independent rect. 7 8
310 84.04 atmosphere 1015.0 720 < th dose independent rect. 7 8
311 84.04 temperature 10.0 720 > th dose independent rect. 15 16
313 84.04 atmosphere 1015.0 30 < th dose dependent rect. 22 1
314 84.05 atmosphere 995.0 720 > th dose independent rect. 15 16
315 84.05 precipitation 0.1 720 < th dose independent rect. 15 16
319 84.05 precipitation 0.1 720 < th dose dependent rect. 15 16
321 84.07 wind 9.0 30 < th dose independent rect. 3 23
324 84.08 temperature 10.0 720 > th dose independent rect. 19 8
325 84.08 temperature 30.0 720 < th dose independent rect. 19 8
326 84.08 humidity 50.0 720 > th dose independent rect. 19 8
327 84.08 atmosphere 995.0 720 > th dose independent rect. 19 8
328 84.08 radiation 1.0 720 < th dose independent rect. 19 8
333 84.08 temperature 10.0 720 > th dose independent rect. 3 16
334 84.08 radiation 1.0 720 < th dose dependent rect. 19 8
339 84.09 temperature 30.0 30 < th dose dependent rect. 22 1
344 84.12 atmosphere 995.0 30 > th dose independent rect. 23 23
388 84.23 wind 9.0 720 < th dose independent rect. 15 8
398 84.28 precipitation 0.1 720 < th dose independent rect. 23 16
399 84.28 precipitation 0.1 720 < th dose dependent rect. 23 16
401 84.30 humidity 50.0 30 > th dose independent rect. 3 23
410 84.38 precipitation 0.1 720 < th dose independent rect. 7 8
411 84.38 precipitation 0.1 720 < th dose dependent rect. 7 8
422 84.48 humidity 90.0 90 < th dose independent rect. 1 6
425 84.52 wind 9.0 720 < th dose independent rect. 23 16
429 84.55 temperature 25.0 720 > th dose independent rect. 1 1
432 84.60 wind 1.0 30 > th dose independent rect. 23 23
436 84.63 temperature 25.0 1440 < th dose independent rect. 1 1
437 84.65 precipitation 0.1 1440 < th dose independent rect. 23 1
438 84.65 precipitation 0.1 1440 < th dose dependent rect. 23 1
439 84.68 temperature 25.0 90 > th dose independent rect. 1 6
472 84.83 radiation 40.0 720 < th dose independent rect. 15 16
473 84.83 precipitation 0.1 30 < th dose independent rect. 23 23
474 84.83 precipitation 0.1 30 < th dose dependent rect. 23 23
476 84.85 humidity 90.0 90 < th dose independent rect. 2 1
491 85.04 temperature 25.0 720 < th dose independent rect. 21 5
493 85.05 temperature 25.0 270 > th dose independent rect. 19 12
494 85.07 humidity 50.0 720 > th dose independent rect. 23 16
497 85.11 wind 1.0 10 > th dose independent rect. 23 7
498 85.11 temperature 25.0 720 > th dose independent rect. 20 7
503 85.16 temperature 25.0 270 > th dose dependent rect. 24 7
506 85.18 temperature 25.0 720 > th dose independent rect. 20 10
507 85.18 humidity 50.0 30 > th dose independent rect. 23 23
513 85.22 atmosphere 1015.0 720 < th dose independent rect. 3 16
514 85.22 temperature 25.0 720 > th dose dependent rect. 1 1
518 85.24 precipitation 0.1 720 < th dose independent rect. 3 16
520 85.24 precipitation 0.1 720 < th dose dependent rect. 3 16
526 85.27 temperature 25.0 90 > th dose dependent rect. 21 10
532 85.29 wind 9.0 720 < th dose independent rect. 15 16
540 85.33 temperature 25.0 720 < th dose independent rect. 21 8
547 85.34 humidity 90.0 90 < th dose independent rect. 1 22
548 85.34 temperature 30.0 30 < th dose independent rect. 3 23
578 85.46 temperature 25.0 720 > th dose dependent rect. 21 2
582 85.49 temperature 25.0 720 > th dose independent rect. 22 1
588 85.50 temperature 25.0 720 > th dose dependent rect. 20 11
592 85.52 humidity 50.0 720 > th dose independent rect. 5 8
594 85.52 temperature 25.0 30 > th dose dependent rect. 5 2
595 85.53 wind 9.0 720 < th dose independent rect. 11 16
604 85.56 temperature 25.0 720 > th dose independent rect. 20 3
623 85.60 temperature 25.0 10 > th dose dependent rect. 21 10
633 85.63 temperature 10.0 720 > th dose independent rect. 17 8
634 85.63 radiation 30.0 720 < th dose independent rect. 17 8
637 85.63 temperature 10.0 720 > th dose independent rect. 1 16
639 85.63 temperature 25.0 720 > th dose dependent rect. 20 6
644 85.64 wind 9.0 720 < th dose independent rect. 7 8
648 85.65 atmosphere 1010.0 30 < th dose independent rect. 6 1
649 85.65 temperature 30.0 720 < th dose independent rect. 15 16
652 85.66 precipitation 0.1 720 < th dose independent rect. 5 8
655 85.66 precipitation 0.1 720 < th dose dependent rect. 5 8
658 85.66 radiation 10.0 10 < th dose dependent rect. 3 23
664 85.68 radiation 10.0 30 < th dose independent rect. 6 1
672 85.69 temperature 10.0 720 > th dose independent rect. 5 8
673 85.69 atmosphere 995.0 720 > th dose independent rect. 5 8
674 85.69 atmosphere 1015.0 720 < th dose independent rect. 5 8
675 85.69 temperature 10.0 720 > th dose independent rect. 13 16
713 85.76 atmosphere 1010.0 30 < th dose dependent rect. 6 1
714 85.77 wind 1.0 10 > th dose independent rect. 8 22
728 85.80 atmosphere 1000.0 90 > th dose independent rect. 23 12
738 85.81 precipitation 0.1 720 < th dose independent rect. 1 16
740 85.81 precipitation 0.1 720 < th dose dependent rect. 1 16
741 85.82 temperature 25.0 90 > th dose independent rect. 5 1
744 85.82 atmosphere 995.0 720 > th dose independent rect. 17 8
758 85.84 wind 3.0 30 > th dose independent rect. 6 1
767 85.85 temperature 25.0 720 > th dose dependent rect. 7 2
779 85.87 humidity 90.0 90 < th dose dependent rect. 2 5
786 85.88 temperature 25.0 270 < th dose independent rect. 20 13
790 85.89 humidity 50.0 720 > th dose independent rect. 7 8
823 85.94 precipitation 0.1 90 < th dose independent rect. 1 22
827 85.94 precipitation 0.1 90 < th dose dependent rect. 1 22
831 85.95 temperature 10.0 1440 > th dose independent rect. 24 7
838 85.95 humidity 50.0 1440 > th dose independent rect. 24 7
843 85.95 atmosphere 995.0 1440 > th dose independent rect. 24 7
844 85.95 radiation 40.0 1440 < th dose independent rect. 24 7
848 85.95 atmosphere 995.0 720 > th dose independent rect. 13 16
849 85.95 temperature 10.0 1440 > th dose independent rect. 7 17
852 85.95 atmosphere 1015.0 30 < th dose independent rect. 3 23
861 85.96 atmosphere 995.0 30 > th dose dependent rect. 23 23
864 85.97 precipitation 0.1 30 < th dose independent rect. 6 17
869 85.97 precipitation 0.1 30 < th dose dependent rect. 6 17
874 85.99 temperature 30.0 720 < th dose independent rect. 3 8
880 85.99 atmosphere 995.0 30 > th dose dependent rect. 3 23
884 86.00 wind 9.0 720 < th dose dependent rect. 2 1
885 86.00 humidity 80.0 4320 < th dose dependent rect. 22 1
891 86.01 atmosphere 1000.0 30 > th dose independent rect. 23 7
892 86.01 temperature 30.0 720 < th dose independent rect. 15 8
910 86.02 wind 9.0 30 < th dose independent rect. 23 7
911 86.02 temperature 10.0 30 > th dose independent rect. 23 7
912 86.02 temperature 30.0 30 < th dose independent rect. 23 7
913 86.02 humidity 50.0 30 > th dose independent rect. 23 7
917 86.02 radiation 20.0 30 < th dose independent rect. 23 7
921 86.02 atmosphere 995.0 720 > th dose independent rect. 1 16
922 86.02 temperature 10.0 30 > th dose independent rect. 6 17
924 86.02 atmosphere 1015.0 30 < th dose independent rect. 6 17
925 86.02 temperature 10.0 90 > th dose independent rect. 1 22
927 86.02 wind 1.0 30 > th dose dependent rect. 6 1
937 86.03 atmosphere 1015.0 90 < th dose independent rect. 1 22
939 86.04 humidity 90.0 720 < th dose independent rect. 1 2
947 86.05 precipitation 0.1 30 < th dose independent rect. 23 7
948 86.05 radiation 10.0 14400 < th dose dependent rect. 24 3
950 86.05 precipitation 0.1 30 < th dose dependent rect. 23 7
953 86.06 atmosphere 1000.0 10 > th dose independent rect. 14 12
955 86.06 wind 1.0 30 > th dose independent rect. 6 17
966 86.08 wind 9.0 30 < th dose independent rect. 6 17
968 86.08 atmosphere 1000.0 30 > th dose dependent rect. 2 6
976 86.09 humidity 60.0 10 > th dose independent rect. 14 12
983 86.09 radiation 40.0 30 < th dose dependent rect. 23 7
998 86.11 wind 1.0 10 > th dose independent rect. 16 14
999 86.11 wind 9.0 90 < th dose independent rect. 1 22