Os03g0407400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0407400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.83 | 0.342 | 3.29 | 0.211 | 0.198 | -0.221 | -0.259 | -1.33 | -0.0576 | 7.13 | 45 | 5888 | -- | -- |
| 55.06 | 0.346 | 3.29 | 0.103 | 0.229 | -0.303 | -0.285 | -- | -0.105 | 6.86 | -35.89 | 4781 | -- | -- |
| 53 | 0.339 | 3.29 | 0.207 | 0.205 | -0.215 | -- | -1.33 | -0.0543 | 7.18 | 41.76 | 5902 | -- | -- |
| 55.27 | 0.346 | 3.28 | 0.1 | 0.231 | -0.29 | -- | -- | -0.0992 | 7.11 | 21.73 | 4830 | -- | -- |
| 55.04 | 0.346 | 3.29 | 0.205 | -- | -0.225 | -- | -1.3 | -0.0539 | -- | 35.62 | 5842 | -- | -- |
| 56.18 | 0.351 | 3.27 | 0.0871 | 0.196 | -- | -0.282 | -- | -0.0322 | 7.01 | -- | -- | -- | -- |
| 56.38 | 0.352 | 3.27 | 0.0822 | 0.195 | -- | -- | -- | -0.0312 | 7.24 | -- | -- | -- | -- |
| 57.49 | 0.353 | 3.29 | 0.117 | -- | -0.255 | -- | -- | -0.0814 | -- | 22.6 | 7109 | -- | -- |
| 55.48 | 0.347 | 3.29 | -- | 0.198 | -0.293 | -- | -- | -0.103 | 7.12 | 31.94 | 4334 | -- | -- |
| 58.4 | 0.357 | 3.27 | 0.0857 | -- | -- | -- | -- | -0.0279 | -- | -- | -- | -- | -- |
| 56.56 | 0.352 | 3.27 | -- | 0.196 | -- | -- | -- | -0.0404 | 7.21 | -- | -- | -- | -- |
| 57.53 | 0.353 | 3.29 | -- | -- | -0.292 | -- | -- | -0.1 | -- | 36.21 | 4301 | -- | -- |
| 58.59 | 0.357 | 3.28 | -- | -- | -- | -- | -- | -0.0374 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.45 | humidity | 80.0 | 10 | < th | dose independent | rect. | 6 | 2 |
| 3 | 49.52 | radiation | 10.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 6 | 49.82 | humidity | 80.0 | 10 | < th | dose independent | rect. | 23 | 9 |
| 34 | 50.88 | radiation | 10.0 | 10 | > th | dose independent | rect. | 16 | 16 |
| 38 | 51.35 | temperature | 25.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 55 | 51.84 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 23 | 16 |
| 56 | 52.10 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 3 | 6 |
| 62 | 52.38 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 15 | 8 |
| 63 | 52.38 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 66 | 52.46 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 21 | 13 |
| 71 | 52.56 | temperature | 10.0 | 720 | > th | dose independent | rect. | 15 | 8 |
| 72 | 52.56 | temperature | 10.0 | 720 | > th | dose independent | rect. | 23 | 16 |
| 75 | 52.61 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 78 | 52.66 | temperature | 10.0 | 720 | > th | dose independent | rect. | 3 | 8 |
| 79 | 52.66 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 3 | 8 |
| 80 | 52.66 | temperature | 10.0 | 720 | > th | dose independent | rect. | 11 | 16 |
| 83 | 52.68 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 8 | 23 |
| 88 | 52.73 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 91 | 52.75 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 92 | 52.75 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 94 | 52.75 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 102 | 52.75 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 11 | 16 |
| 103 | 52.75 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 105 | 52.75 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 11 | 16 |
| 107 | 52.76 | wind | 9.0 | 720 | < th | dose independent | rect. | 3 | 8 |
| 109 | 52.76 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 1 | 7 |
| 125 | 52.81 | humidity | 90.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 130 | 52.82 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 2 | 2 |
| 133 | 52.84 | humidity | 70.0 | 4320 | > th | dose dependent | rect. | 3 | 9 |
| 136 | 52.86 | wind | 7.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 140 | 52.86 | humidity | 50.0 | 720 | > th | dose independent | rect. | 3 | 8 |
| 142 | 52.87 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 145 | 52.87 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 23 | 14 |
| 148 | 52.88 | temperature | 20.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 149 | 52.88 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 152 | 52.88 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 156 | 52.88 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 166 | 52.88 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 167 | 52.88 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 187 | 52.88 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 24 | 23 |
| 191 | 52.88 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 200 | 52.89 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 202 | 52.90 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 208 | 52.91 | wind | 1.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 209 | 52.91 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 213 | 52.92 | wind | 5.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 216 | 52.92 | temperature | 10.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 218 | 52.92 | temperature | 30.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 219 | 52.92 | humidity | 50.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 222 | 52.92 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 223 | 52.92 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 225 | 52.92 | radiation | 1.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 230 | 52.92 | temperature | 10.0 | 30 | > th | dose independent | rect. | 23 | 23 |
| 231 | 52.92 | wind | 9.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 232 | 52.92 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 239 | 52.93 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 240 | 52.93 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 22 | 1 |
| 242 | 52.93 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 267 | 52.96 | humidity | 50.0 | 4320 | > th | dose dependent | sin | 5 | NA |
| 276 | 52.97 | wind | 1.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 277 | 52.97 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 288 | 52.99 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 299 | 53.00 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 323 | 53.01 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 23 | 16 |
| 366 | 53.05 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 4 | 9 |
| 367 | 53.05 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 4 | 9 |
| 390 | 53.07 | humidity | 90.0 | 4320 | < th | dose dependent | sin | 6 | NA |
| 464 | 53.11 | wind | 7.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 468 | 53.11 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 3 | 8 |
| 507 | 53.13 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 529 | 53.14 | wind | 5.0 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 530 | 53.14 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 546 | 53.15 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 3 | 12 |
| 575 | 53.17 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 613 | 53.19 | humidity | 80.0 | 4320 | < th | dose independent | sin | 4 | NA |
| 664 | 53.21 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 680 | 53.22 | humidity | 80.0 | 4320 | > th | dose independent | sin | 4 | NA |
| 699 | 53.22 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 23 | 23 |
| 791 | 53.25 | wind | 9.0 | 720 | < th | dose independent | rect. | 15 | 8 |
| 809 | 53.26 | wind | 3.0 | 30 | < th | dose independent | rect. | 7 | 1 |
| 856 | 53.27 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 24 | 12 |
| 869 | 53.27 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 24 | 12 |
| 886 | 53.28 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 24 | 11 |
| 890 | 53.28 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 11 | 2 |
| 948 | 53.30 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 24 | 14 |
| 976 | 53.30 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 24 | 14 |
| 999 | 53.31 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 24 | 14 |