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Os03g0406200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Elongation factor 1 beta 2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.8 (0.0217) R2 : 0.424
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.01 (0.0557) R2dC : 0.415 R2C : 0.405
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.155 (0.0456) R2dN8 : 0.0189 R2N8 : 0.00944
σ : 0.408
deviance : 76.21
__
_____
C
peak time of C : 19.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
62.47 0.371 11.8 0.256 1.01 0.527 0.459 -0.17 0.0879 19.6 20.14 1260 -- --
62.56 0.368 11.8 0.264 0.999 0.522 0.505 -- 0.0956 19.6 20.31 1249 -- --
62.95 0.37 11.8 0.231 1.01 0.511 -- -0.276 0.0779 19.6 20.4 1277 -- --
63.04 0.37 11.8 0.27 1.01 0.53 -- -- 0.0902 19.6 20.5 1259 -- --
112.42 0.494 11.8 0.272 -- 0.654 -- 0.135 0.0621 -- 20.49 705 -- --
69 0.389 11.8 0.508 1.01 -- 0.518 -- 0.209 19.7 -- -- -- --
69.76 0.391 11.8 0.495 1.01 -- -- -- 0.21 19.7 -- -- -- --
96.06 0.456 11.8 0.27 -- 0.716 -- -- -0.0243 -- 25.89 510 -- --
64.15 0.373 11.8 -- 1.04 0.672 -- -- 0.0329 19.5 19.9 2770 -- --
124.63 0.522 11.8 0.481 -- -- -- -- 0.195 -- -- -- -- --
76.21 0.408 11.8 -- 1.01 -- -- -- 0.155 19.7 -- -- -- --
97.79 0.461 11.8 -- -- 0.756 -- -- -0.0396 -- 26.2 515 -- --
130.74 0.534 11.8 -- -- -- -- -- 0.142 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 59.27 temperature 10 90 > th dose dependent rect. 9 19
2 59.50 temperature 10 10 > th dose dependent rect. 9 20
5 59.66 wind 1 14400 < th dose independent rect. 24 2
7 59.87 wind 1 14400 > th dose independent rect. 24 2
13 60.33 atmosphere 1005 10 < th dose dependent rect. 24 10
29 60.54 temperature 10 270 > th dose dependent rect. 23 14
35 60.67 radiation 1 1440 < th dose independent rect. 11 1
37 60.67 radiation 1 1440 < th dose dependent rect. 11 1
43 60.83 temperature 10 43200 > th dose independent rect. 10 6
54 61.03 temperature 20 270 > th dose independent rect. 22 15
63 61.25 temperature 20 4320 < th dose independent rect. 20 1
71 61.32 temperature 10 43200 > th dose independent rect. 10 8
75 61.34 temperature 15 270 > th dose dependent rect. 8 6
80 61.42 atmosphere 995 43200 > th dose independent rect. 20 16
85 61.45 atmosphere 995 43200 < th dose independent rect. 21 15
98 61.54 radiation 1 10 > th dose dependent rect. 18 15
104 61.57 radiation 1 10 > th dose dependent rect. 5 4
125 61.63 temperature 30 270 < th dose dependent rect. 3 6
146 61.73 atmosphere 995 43200 < th dose dependent rect. 22 11
152 61.75 temperature 20 1440 > th dose independent rect. 6 1
165 61.77 temperature 20 4320 > th dose independent rect. 19 2
170 61.78 atmosphere 995 43200 < th dose dependent sin 10 NA
174 61.79 atmosphere 995 43200 > th dose independent rect. 3 6
175 61.79 humidity 90 14400 > th dose dependent rect. 6 1
191 61.80 atmosphere 995 43200 > th dose independent rect. 1 9
200 61.83 atmosphere 995 43200 < th dose independent rect. 1 9
205 61.84 atmosphere 995 43200 < th dose independent rect. 2 7
209 61.85 atmosphere 995 43200 > th dose independent rect. 5 3
219 61.86 humidity 90 10 < th dose dependent rect. 23 10
230 61.89 radiation 1 1440 < th dose independent rect. 9 5
235 61.89 radiation 1 1440 < th dose dependent rect. 9 5
239 61.90 atmosphere 995 43200 < th dose independent rect. 4 4
241 61.90 wind 3 43200 < th dose dependent rect. 8 1
245 61.92 temperature 20 4320 > th dose independent rect. 16 6
248 61.92 temperature 15 270 > th dose independent rect. 8 19
258 61.95 radiation 1 1440 < th dose independent rect. 13 1
260 61.95 temperature 20 1440 > th dose independent rect. 18 13
261 61.95 radiation 1 1440 < th dose dependent rect. 13 1
265 61.97 temperature 20 1440 < th dose independent rect. 1 6
272 61.98 temperature 20 1440 < th dose independent rect. 6 1
274 61.98 radiation 1 1440 > th dose independent rect. 8 6
281 61.99 radiation 1 1440 > th dose independent rect. 8 2
287 61.99 temperature 15 270 > th dose independent rect. 7 21
289 62.00 temperature 20 1440 > th dose independent rect. 1 6
292 62.01 atmosphere 995 43200 < th dose independent sin 8 NA
307 62.02 radiation 1 10 > th dose dependent rect. 16 17
310 62.03 temperature 20 1440 < th dose independent rect. 19 12
333 62.06 radiation 1 1440 > th dose independent rect. 8 4
335 62.06 atmosphere 995 43200 < th dose dependent rect. 3 5
345 62.08 temperature 20 1440 > th dose independent rect. 19 9
351 62.09 temperature 20 1440 > th dose independent sin 12 NA
362 62.10 humidity 90 14400 > th dose independent rect. 6 2
388 62.14 radiation 1 1440 > th dose independent rect. 13 1
404 62.14 humidity 90 14400 > th dose dependent rect. 6 7
405 62.14 temperature 15 10 > th dose dependent rect. 9 9
420 62.16 temperature 20 1440 < th dose independent rect. 19 9
454 62.19 temperature 20 1440 < th dose independent sin 11 NA
467 62.20 temperature 20 1440 > th dose independent rect. 1 2
486 62.20 humidity 90 14400 > th dose dependent rect. 4 15
500 62.23 temperature 20 1440 < th dose independent rect. 1 3
526 62.25 wind 1 43200 > th dose independent rect. 8 1
540 62.25 humidity 90 10 < th dose dependent rect. 4 5
544 62.25 temperature 30 270 < th dose dependent rect. 3 16
576 62.28 wind 5 14400 < th dose independent rect. 9 1
592 62.28 temperature 15 10 > th dose dependent rect. 9 14
593 62.28 temperature 30 90 < th dose dependent rect. 5 14
597 62.28 humidity 90 14400 > th dose dependent rect. 6 19
626 62.30 radiation 1 90 > th dose independent rect. 18 15
632 62.31 atmosphere 995 43200 > th dose independent sin 8 NA
641 62.31 humidity 90 14400 > th dose dependent sin 0 NA
664 62.33 wind 5 14400 > th dose independent rect. 9 1
669 62.33 wind 9 14400 < th dose independent rect. 20 9
694 62.34 humidity 90 14400 > th dose independent rect. 2 14
713 62.35 humidity 90 14400 > th dose independent rect. 2 17
717 62.35 wind 9 270 < th dose dependent rect. 8 19
718 62.35 temperature 15 270 > th dose dependent rect. 17 21
759 62.38 wind 7 14400 > th dose independent rect. 20 4
808 62.40 humidity 90 10 < th dose dependent rect. 2 7
813 62.41 humidity 90 14400 > th dose independent rect. 6 7
837 62.42 wind 9 14400 < th dose independent rect. 20 4
841 62.42 radiation 1 90 > th dose independent rect. 4 5
850 62.42 wind 9 14400 < th dose independent rect. 20 11
878 62.44 humidity 90 14400 < th dose independent rect. 7 1
895 62.45 humidity 90 14400 > th dose independent rect. 18 1
900 62.45 humidity 90 30 < th dose independent rect. 2 7
910 62.45 radiation 20 1440 < th dose dependent rect. 11 1
913 62.45 humidity 90 14400 > th dose dependent rect. 9 16
916 62.46 wind 5 270 < th dose independent rect. 4 3
918 62.46 humidity 90 10 < th dose independent rect. 5 4
934 62.46 wind 9 270 < th dose dependent rect. 7 21
938 62.47 humidity 90 14400 > th dose independent sin 3 NA
952 62.47 wind 7 270 < th dose independent rect. 8 19
971 62.48 wind 3 14400 > th dose dependent rect. 9 1
982 62.49 wind 9 14400 > th dose independent rect. 20 15
986 62.49 humidity 90 14400 > th dose independent rect. 2 22
987 62.49 humidity 90 14400 > th dose dependent sin 19 NA