Os03g0405600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os03g0405600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 327.75 | 0.851 | 3.43 | 0.239 | 0.24 | -0.834 | -0.0432 | -3.49 | -0.316 | 14.5 | 59.54 | 4157 | -- | -- |
| 340.93 | 0.86 | 3.43 | -0.0543 | 0.222 | -0.959 | -0.219 | -- | -0.411 | 13.9 | 60.83 | 4085 | -- | -- |
| 327.73 | 0.843 | 3.43 | 0.238 | 0.246 | -0.833 | -- | -3.47 | -0.316 | 14.4 | 59.87 | 4123 | -- | -- |
| 340.99 | 0.86 | 3.43 | -0.0516 | 0.231 | -0.986 | -- | -- | -0.417 | 14.1 | 60 | 4080 | -- | -- |
| 330.95 | 0.847 | 3.43 | 0.216 | -- | -0.839 | -- | -3.38 | -0.325 | -- | 59.09 | 4294 | -- | -- |
| 352.95 | 0.881 | 3.37 | -0.129 | 0.196 | -- | -0.256 | -- | -0.186 | 14.7 | -- | -- | -- | -- |
| 353.18 | 0.88 | 3.37 | -0.135 | 0.197 | -- | -- | -- | -0.187 | 14.8 | -- | -- | -- | -- |
| 343.76 | 0.864 | 3.43 | -0.0664 | -- | -0.966 | -- | -- | -0.445 | -- | 61 | 4287 | -- | -- |
| 341.09 | 0.86 | 3.43 | -- | 0.239 | -1 | -- | -- | -0.416 | 14.2 | 60 | 4078 | -- | -- |
| 355.41 | 0.881 | 3.38 | -0.143 | -- | -- | -- | -- | -0.192 | -- | -- | -- | -- | -- |
| 353.66 | 0.88 | 3.37 | -- | 0.199 | -- | -- | -- | -0.172 | 14.8 | -- | -- | -- | -- |
| 343.88 | 0.864 | 3.43 | -- | -- | -0.986 | -- | -- | -0.443 | -- | 61 | 4290 | -- | -- |
| 355.95 | 0.881 | 3.37 | -- | -- | -- | -- | -- | -0.176 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 324.46 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 2 | 324.67 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 3 | 324.73 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 10 | 3 |
| 4 | 325.10 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 10 | 3 |
| 5 | 325.40 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 10 | 5 |
| 13 | 326.01 | humidity | 60.0 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 27 | 326.98 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 42 | 327.15 | humidity | 60.0 | 4320 | > th | dose dependent | rect. | 10 | 17 |
| 43 | 327.20 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 64 | 327.46 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 10 | 21 |
| 65 | 327.47 | temperature | 20.0 | 10 | < th | dose independent | rect. | 10 | 2 |
| 67 | 327.47 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 10 | 2 |
| 69 | 327.49 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 19 | 21 |
| 72 | 327.50 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 73 | 327.50 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 74 | 327.53 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 23 | 10 |
| 94 | 327.59 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 10 | 20 |
| 96 | 327.60 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 10 | 10 |
| 112 | 327.62 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 114 | 327.62 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 20 | 3 |
| 116 | 327.63 | temperature | 20.0 | 90 | < th | dose independent | rect. | 10 | 1 |
| 121 | 327.64 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 10 | 10 |
| 135 | 327.67 | humidity | 60.0 | 4320 | > th | dose dependent | rect. | 18 | 20 |
| 151 | 327.75 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 11 | 20 |
| 166 | 327.80 | humidity | 90.0 | 90 | > th | dose independent | rect. | 10 | 1 |
| 168 | 327.80 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 10 | 1 |
| 190 | 327.80 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 192 | 327.80 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 219 | 327.82 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 19 | 22 |
| 252 | 328.01 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 4 | 12 |
| 352 | 328.27 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 17 | 9 |
| 360 | 328.30 | humidity | 60.0 | 4320 | > th | dose dependent | rect. | 5 | 22 |
| 362 | 328.31 | humidity | 70.0 | 4320 | > th | dose independent | sin | 23 | NA |
| 379 | 328.40 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 17 | 20 |
| 390 | 328.43 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 17 | 9 |
| 398 | 328.46 | humidity | 60.0 | 4320 | > th | dose dependent | no | NA | NA |
| 399 | 328.46 | humidity | 90.0 | 4320 | < th | dose dependent | sin | 15 | NA |
| 401 | 328.47 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 2 | 12 |
| 404 | 328.48 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 4 | 10 |
| 410 | 328.49 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 6 | 8 |
| 415 | 328.49 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 20 | 18 |
| 432 | 328.52 | humidity | 70.0 | 4320 | < th | dose independent | sin | 23 | NA |
| 452 | 328.54 | humidity | 60.0 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 565 | 328.81 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 17 | 17 |
| 618 | 328.92 | humidity | 50.0 | 4320 | > th | dose dependent | sin | 16 | NA |
| 626 | 328.93 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 19 | 6 |
| 668 | 329.01 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 4 | 16 |
| 699 | 329.02 | humidity | 70.0 | 4320 | > th | dose independent | no | NA | NA |
| 734 | 329.03 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 735 | 329.03 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 8 | 6 |
| 787 | 329.11 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 861 | 329.23 | temperature | 30.0 | 4320 | < th | dose independent | sin | 8 | NA |
| 908 | 329.30 | humidity | 80.0 | 4320 | < th | dose independent | sin | 15 | NA |
| 942 | 329.34 | humidity | 80.0 | 4320 | > th | dose independent | sin | 14 | NA |
| 974 | 329.36 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 18 | 22 |
| 998 | 329.41 | temperature | 30.0 | 4320 | > th | dose independent | sin | 8 | NA |