FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0405400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.3 (0.0415) R2 : 0.721
β1 : 1.7 (0.154) R2dD : 0.0792 R2D : 0.0738
β2 : 1.07 (0.1) R2dC : 0.07 R2C : -0.019
β3 : 2.05 (0.167) R2dE : 0.0973 R2E : 0.0941
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.99 (0.089) R2dN8 : 0.416 R2N8 : 0.419
σ : 0.775
deviance : 276.78
__
_____
C
peak time of C : 1.67
E
wheather : radiation
threshold : 1.058
memory length : 4347
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.8
open length of G : 6.75

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
274.84 0.779 6.3 1.96 1.08 2.02 0.35 -1.51 -2 1.58 1.099 4339 17.9 6.77
276.8 0.775 6.3 1.72 1.1 2.03 0.359 -- -1.97 1.52 1.02 4347 17.8 6.75
273.15 0.77 6.31 2.02 1.04 2.04 -- -1.34 -1.92 1.59 0.9717 4362 17.7 6.71
276.78 0.775 6.3 1.7 1.07 2.05 -- -- -1.99 1.67 1.058 4347 17.8 6.75
302.42 0.81 6.27 2.23 -- 2.3 -- -1.4 -1.87 -- 0.36 7532 17.6 8.05
364.15 0.895 6.31 2.04 1.2 -- -0.0947 -- -2.09 0.816 -- -- -- --
364.19 0.894 6.31 2.05 1.2 -- -- -- -2.08 0.835 -- -- -- --
301.03 0.808 6.27 2.02 -- 2.35 -- -- -1.88 -- 0.3932 7512 17.6 10.1
331.13 0.848 6.31 -- 1.2 2.89 -- -- -2.39 1.6 4.159 4326 17.9 6.73
453.5 0.995 6.29 2.09 -- -- -- -- -2.06 -- -- -- -- --
474.48 1.02 6.36 -- 1.23 -- -- -- -2.31 0.91 -- -- -- --
346.15 0.867 6.27 -- -- 2.68 -- -- -1.84 -- 2.695 8739 17.8 11.5
568.66 1.11 6.34 -- -- -- -- -- -2.29 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 278.34 radiation 1.0 14400 < th dose dependent rect. 4 1
2 278.65 radiation 1.0 14400 < th dose dependent rect. 2 3
5 280.85 radiation 1.0 43200 < th dose independent rect. 18 11
6 280.99 radiation 20.0 43200 < th dose dependent rect. 4 1
9 281.25 radiation 1.0 43200 < th dose independent rect. 18 7
12 281.32 radiation 1.0 43200 < th dose independent rect. 18 3
19 281.42 radiation 1.0 14400 < th dose dependent rect. 18 3
77 283.75 radiation 1.0 43200 > th dose dependent rect. 18 11
88 284.00 wind 5.0 43200 < th dose independent rect. 13 2
94 284.21 wind 5.0 43200 > th dose independent rect. 13 2
95 284.29 temperature 15.0 43200 < th dose dependent rect. 3 1
97 284.43 wind 9.0 43200 > th dose independent rect. 18 3
101 284.65 wind 5.0 43200 < th dose independent rect. 11 6
102 284.67 radiation 1.0 43200 > th dose dependent rect. 18 1
123 285.05 wind 5.0 43200 > th dose independent rect. 11 6
138 285.65 radiation 1.0 14400 > th dose independent rect. 18 1
153 285.79 wind 3.0 43200 > th dose dependent rect. 13 2
156 285.89 radiation 10.0 4320 < th dose independent rect. 16 15
157 285.91 humidity 90.0 43200 > th dose dependent rect. 5 1
174 285.99 wind 9.0 43200 > th dose dependent rect. 18 3
177 286.03 wind 9.0 43200 < th dose independent rect. 18 3
199 286.52 wind 1.0 43200 < th dose dependent rect. 24 1
201 286.53 radiation 20.0 43200 < th dose independent rect. 1 5
226 286.80 wind 1.0 43200 < th dose dependent rect. 19 2
247 287.21 radiation 40.0 14400 < th dose independent rect. 15 1
248 287.22 wind 3.0 43200 > th dose dependent rect. 11 5
282 287.65 radiation 20.0 43200 < th dose independent rect. 4 2
286 287.66 temperature 15.0 43200 < th dose dependent sin 7 NA
296 287.75 radiation 40.0 14400 < th dose independent rect. 15 6
313 287.85 wind 9.0 43200 > th dose dependent rect. 18 5
322 287.90 radiation 40.0 43200 < th dose independent rect. 15 17
326 287.92 humidity 90.0 14400 < th dose independent rect. 24 1
340 287.99 radiation 40.0 43200 < th dose independent rect. 2 6
345 288.01 radiation 40.0 43200 < th dose independent rect. 6 2
346 288.01 radiation 40.0 43200 < th dose independent rect. 4 4
349 288.02 radiation 40.0 43200 < th dose independent rect. 24 8
350 288.02 wind 9.0 43200 < th dose dependent rect. 13 1
354 288.03 radiation 40.0 43200 < th dose independent rect. 15 14
360 288.05 radiation 40.0 43200 < th dose independent rect. 15 12
367 288.08 radiation 40.0 43200 < th dose independent rect. 15 10
397 288.24 radiation 40.0 43200 < th dose independent rect. 19 13
418 288.33 radiation 20.0 43200 > th dose dependent rect. 9 1
424 288.38 radiation 30.0 43200 < th dose independent rect. 9 1
449 288.51 wind 9.0 43200 > th dose dependent rect. 18 7
496 288.78 atmosphere 1005.0 43200 < th dose independent rect. 3 1
513 288.85 radiation 40.0 43200 > th dose independent rect. 11 1
528 288.91 radiation 40.0 43200 > th dose dependent rect. 11 1
541 288.95 wind 9.0 43200 < th dose dependent rect. 11 4
546 288.96 radiation 10.0 43200 > th dose dependent rect. 5 1
567 288.98 radiation 20.0 43200 < th dose independent rect. 21 9
636 289.24 radiation 30.0 14400 > th dose dependent rect. 16 16
647 289.28 radiation 30.0 14400 > th dose independent rect. 16 16
648 289.28 precipitation 0.1 43200 > th dose dependent rect. 20 2
668 289.37 temperature 15.0 43200 < th dose dependent no NA NA
681 289.50 radiation 20.0 43200 > th dose independent rect. 6 4
729 289.74 atmosphere 1005.0 43200 > th dose independent rect. 4 1
737 289.78 humidity 60.0 43200 > th dose independent rect. 11 1
744 289.85 humidity 90.0 14400 > th dose dependent rect. 22 8
747 289.89 temperature 15.0 43200 > th dose independent rect. 22 1
756 289.91 atmosphere 1005.0 43200 > th dose independent rect. 1 4
768 289.93 atmosphere 1005.0 43200 > th dose independent rect. 1 1
805 290.03 radiation 10.0 43200 > th dose dependent rect. 5 5
818 290.04 temperature 15.0 43200 < th dose independent rect. 6 1
826 290.08 radiation 1.0 43200 < th dose independent rect. 24 5
846 290.20 radiation 1.0 43200 < th dose independent rect. 4 1
850 290.21 radiation 1.0 43200 > th dose independent rect. 7 2
852 290.22 radiation 1.0 43200 < th dose independent rect. 7 2
856 290.23 radiation 1.0 43200 > th dose independent rect. 10 1
866 290.26 temperature 15.0 43200 < th dose independent rect. 22 1
876 290.30 radiation 1.0 43200 < th dose independent rect. 10 1
880 290.30 radiation 1.0 43200 < th dose dependent rect. 10 1
882 290.30 humidity 90.0 14400 > th dose dependent rect. 23 4
886 290.31 radiation 1.0 43200 < th dose independent rect. 2 3
920 290.37 radiation 1.0 43200 < th dose dependent rect. 8 1
926 290.41 humidity 90.0 43200 > th dose dependent rect. 4 5
952 290.47 temperature 15.0 43200 < th dose independent rect. 5 3
991 290.56 radiation 1.0 43200 > th dose independent rect. 4 1