Os03g0405200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os03g0405200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 122.51 | 0.52 | 11.5 | -0.031 | 0.942 | -1.27 | -0.627 | 0.56 | -7.87 | 1.69 | 24.4 | 295 | 22.7 | -- |
| 123.29 | 0.517 | 11.5 | 0.0281 | 0.981 | -1.24 | -0.839 | -- | -7.87 | 1.47 | 24.4 | 276 | 22.7 | -- |
| 123.67 | 0.518 | 11.5 | -0.0401 | 0.939 | -1.26 | -- | 0.797 | -7.87 | 1.53 | 24.5 | 279 | 22.5 | -- |
| 126 | 0.523 | 11.5 | 0.0901 | 0.973 | -1.27 | -- | -- | -7.84 | 1.53 | 24.41 | 275 | 22.5 | -- |
| 160.42 | 0.59 | 11.4 | 0.272 | -- | -1.27 | -- | 1.08 | -7.49 | -- | 34.4 | 277 | 20.9 | -- |
| 161.98 | 0.597 | 11.4 | 0.266 | 1.29 | -- | -0.976 | -- | -7.51 | 23.3 | -- | -- | -- | -- |
| 166.04 | 0.603 | 11.4 | 0.306 | 1.29 | -- | -- | -- | -7.51 | 23.3 | -- | -- | -- | -- |
| 164.08 | 0.597 | 11.4 | 0.219 | -- | -1.34 | -- | -- | -7.5 | -- | 32.3 | 548 | 22.8 | -- |
| 126.15 | 0.523 | 11.5 | -- | 0.955 | -1.28 | -- | -- | -7.84 | 1.44 | 24.38 | 272 | 22.5 | -- |
| 270.8 | 0.769 | 11.4 | 0.338 | -- | -- | -- | -- | -7.5 | -- | -- | -- | -- | -- |
| 168.51 | 0.607 | 11.4 | -- | 1.3 | -- | -- | -- | -7.54 | 23.3 | -- | -- | -- | -- |
| 164.67 | 0.598 | 11.4 | -- | -- | -1.52 | -- | -- | -7.46 | -- | 30.53 | 640 | 23.7 | -- |
| 273.82 | 0.772 | 11.4 | -- | -- | -- | -- | -- | -7.54 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 120.63 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 2 | 120.66 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 2 |
| 25 | 123.92 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 9 |
| 48 | 126.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 49 | 126.54 | temperature | 20 | 270 | > th | dose dependent | sin | 6 | NA |
| 50 | 126.57 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 9 |
| 64 | 127.33 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 66 | 127.38 | temperature | 25 | 270 | < th | dose independent | sin | 5 | NA |
| 84 | 128.20 | temperature | 25 | 270 | > th | dose independent | sin | 5 | NA |
| 97 | 129.00 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 17 |
| 133 | 129.84 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 147 | 130.46 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 9 |
| 161 | 130.75 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 177 | 131.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 233 | 131.99 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 13 |
| 235 | 132.00 | temperature | 30 | 270 | < th | dose dependent | sin | 5 | NA |
| 439 | 134.70 | temperature | 25 | 720 | < th | dose dependent | sin | 8 | NA |
| 510 | 135.34 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 17 |
| 533 | 135.57 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 11 |
| 538 | 135.63 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 19 |
| 557 | 135.79 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 1 |
| 659 | 136.61 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 1 |
| 675 | 136.71 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 3 |
| 919 | 138.40 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 950 | 138.60 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 3 |