Os03g0405100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RpsU-divergently transcribed family protein.
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Os03g0405100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RpsU-divergently transcribed family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.44 | 0.272 | 9.78 | 0.703 | 0.845 | 0.468 | 0.0957 | -0.339 | 0.0271 | 11.9 | 19.5 | 62 | -- | -- |
| 33.5 | 0.27 | 9.79 | 0.687 | 0.84 | 0.586 | 0.164 | -- | 0.0205 | 12 | 19.29 | 141 | -- | -- |
| 33.34 | 0.269 | 9.78 | 0.711 | 0.847 | 0.485 | -- | -0.361 | 0.0267 | 11.9 | 19.2 | 53 | -- | -- |
| 33.57 | 0.27 | 9.79 | 0.708 | 0.839 | 0.605 | -- | -- | 0.0224 | 12 | 19.18 | 142 | -- | -- |
| 69.52 | 0.388 | 9.79 | 0.733 | -- | 0.527 | -- | -0.192 | 0.053 | -- | 20.2 | 758 | -- | -- |
| 41.73 | 0.303 | 9.81 | 0.504 | 0.758 | -- | 0.3 | -- | -0.0615 | 11.8 | -- | -- | -- | -- |
| 42.12 | 0.304 | 9.81 | 0.516 | 0.757 | -- | -- | -- | -0.0602 | 11.8 | -- | -- | -- | -- |
| 69.55 | 0.388 | 9.8 | 0.716 | -- | 0.614 | -- | -- | 0.0399 | -- | 19.6 | 662 | -- | -- |
| 44.6 | 0.311 | 9.81 | -- | 0.822 | 0.34 | -- | -- | -0.0668 | 11.9 | 20.4 | 110 | -- | -- |
| 78.16 | 0.413 | 9.82 | 0.494 | -- | -- | -- | -- | -0.0697 | -- | -- | -- | -- | -- |
| 49.14 | 0.328 | 9.82 | -- | 0.751 | -- | -- | -- | -0.118 | 11.7 | -- | -- | -- | -- |
| 80.58 | 0.418 | 9.8 | -- | -- | 0.378 | -- | -- | 0.00286 | -- | 21.3 | 780 | -- | -- |
| 84.59 | 0.429 | 9.83 | -- | -- | -- | -- | -- | -0.124 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.92 | temperature | 20 | 90 | < th | dose independent | sin | 12 | NA |
| 3 | 32.03 | temperature | 20 | 90 | > th | dose independent | sin | 13 | NA |
| 5 | 32.12 | temperature | 20 | 10 | < th | dose independent | sin | 11 | NA |
| 10 | 32.18 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 12 |
| 32 | 32.45 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 16 |
| 47 | 32.55 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 18 |
| 53 | 32.59 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 11 |
| 56 | 32.59 | temperature | 20 | 10 | < th | dose independent | rect. | 16 | 18 |
| 104 | 32.77 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 10 |
| 137 | 32.89 | temperature | 20 | 90 | < th | dose independent | rect. | 12 | 18 |
| 185 | 33.04 | temperature | 20 | 10 | < th | dose independent | rect. | 14 | 20 |
| 302 | 33.33 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 22 |
| 322 | 33.38 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 21 |
| 413 | 33.54 | humidity | 90 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 459 | 33.64 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 23 |
| 493 | 33.70 | temperature | 20 | 90 | < th | dose independent | no | NA | NA |
| 515 | 33.75 | temperature | 20 | 90 | > th | dose independent | no | NA | NA |
| 540 | 33.79 | temperature | 20 | 90 | < th | dose independent | rect. | 5 | 23 |
| 543 | 33.79 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 23 |
| 553 | 33.81 | temperature | 20 | 10 | < th | dose independent | rect. | 21 | 23 |
| 554 | 33.82 | temperature | 20 | 10 | < th | dose independent | no | NA | NA |
| 559 | 33.83 | temperature | 20 | 10 | < th | dose independent | rect. | 5 | 23 |
| 562 | 33.83 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 23 |
| 572 | 33.86 | temperature | 20 | 90 | < th | dose independent | rect. | 3 | 23 |
| 594 | 33.90 | temperature | 20 | 90 | > th | dose independent | rect. | 7 | 23 |
| 595 | 33.90 | temperature | 20 | 10 | < th | dose independent | rect. | 3 | 23 |
| 624 | 33.95 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 23 |
| 625 | 33.95 | humidity | 80 | 720 | < th | dose dependent | rect. | 19 | 20 |
| 626 | 33.95 | humidity | 50 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 629 | 33.96 | temperature | 20 | 30 | < th | dose independent | rect. | 1 | 23 |
| 645 | 34.00 | temperature | 20 | 30 | < th | dose dependent | rect. | 17 | 17 |
| 672 | 34.03 | temperature | 20 | 10 | > th | dose independent | rect. | 13 | 23 |
| 678 | 34.03 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 733 | 34.12 | temperature | 20 | 90 | > th | dose independent | rect. | 13 | 15 |
| 763 | 34.16 | temperature | 20 | 270 | > th | dose independent | rect. | 10 | 23 |
| 774 | 34.17 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 23 |
| 862 | 34.25 | temperature | 20 | 30 | < th | dose dependent | sin | 9 | NA |
| 875 | 34.26 | humidity | 90 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 903 | 34.27 | humidity | 80 | 1440 | < th | dose dependent | rect. | 21 | 16 |
| 915 | 34.29 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 14 |
| 932 | 34.31 | humidity | 90 | 10 | < th | dose dependent | rect. | 23 | 21 |