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Os03g0404500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.98 (0.0403) R2 : 0.781
β1 : -- (--) R2dD : -- R2D : --
β2 : 5.03 (0.149) R2dC : 1.23 R2C : 0.563
β3 : 1.43 (0.119) R2dE : 0.157 R2E : -0.467
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.631 (0.085) R2dN8 : 0.0412 R2N8 : 0.0395
σ : 0.744
deviance : 255.13
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C
peak time of C : 20.4
E
wheather : temperature
threshold : 19.7
memory length : 849
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 22.3
open length of G : 4.98

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
250.19 0.743 8 0.0738 4.94 1.32 -1.29 -1.32 0.693 20.3 19.78 748 23 3.81
254.5 0.743 8.01 0.158 5.02 1.38 -0.413 -- 0.617 20.4 19.8 821 22.8 4.22
254.29 0.743 7.99 0.091 4.9 1.33 -- -1.05 0.737 20.3 19.8 762 23 3.72
254.34 0.743 7.99 0.164 5.03 1.39 -- -- 0.634 20.4 19.79 836 22.7 4.66
400.46 0.932 7.78 1.05 -- -2.79 -- 0.385 1.84 -- 14.39 2070 0.784 5.23
310.32 0.826 7.88 0.691 3.7 -- -1.29 -- 0.953 20.7 -- -- -- --
315.81 0.832 7.88 0.735 3.7 -- -- -- 0.955 20.7 -- -- -- --
327.05 0.842 7.65 1.19 -- -3.29 -- -- 1.32 -- 2.975 2093 23.3 7.64
255.13 0.744 7.98 -- 5.03 1.43 -- -- 0.631 20.4 19.7 849 22.3 4.98
1091.44 1.54 7.78 0.728 -- -- -- -- 0.924 -- -- -- -- --
330.06 0.85 7.9 -- 3.7 -- -- -- 0.873 20.7 -- -- -- --
326.24 0.841 7.75 -- -- -3.23 -- -- 0.961 -- 6.65 2093 23.9 6.82
1105.42 1.55 7.8 -- -- -- -- -- 0.844 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 253.70 temperature 20 720 > th dose independent rect. 23 4
7 256.91 radiation 10 10 < th dose dependent rect. 6 23
8 256.94 temperature 30 270 < th dose dependent sin 6 NA
9 257.47 temperature 30 270 < th dose dependent rect. 2 9
12 258.18 temperature 30 90 < th dose dependent rect. 4 9
14 258.54 temperature 10 270 > th dose dependent sin 4 NA
22 259.66 temperature 25 270 < th dose independent rect. 3 8
37 261.01 temperature 10 30 > th dose dependent rect. 6 23
57 262.32 temperature 10 720 > th dose dependent rect. 22 6
59 262.55 temperature 10 10 > th dose dependent rect. 8 21
70 263.35 radiation 1 10 > th dose independent sin 3 NA
72 263.42 temperature 20 720 > th dose independent rect. 22 11
77 263.65 temperature 20 270 > th dose dependent rect. 23 15
112 264.76 temperature 20 270 > th dose dependent rect. 23 12
114 264.79 radiation 1 10 < th dose independent sin 6 NA
116 264.84 temperature 15 270 > th dose dependent rect. 6 10
120 264.90 temperature 20 720 < th dose independent rect. 22 9
123 264.97 temperature 10 270 > th dose dependent rect. 6 21
135 265.19 humidity 50 10 > th dose dependent rect. 13 16
146 265.45 temperature 10 720 > th dose dependent rect. 23 12
147 265.50 temperature 30 720 < th dose dependent rect. 3 3
148 265.50 radiation 40 30 < th dose dependent rect. 12 17
153 265.61 temperature 25 270 > th dose independent sin 3 NA
164 265.74 temperature 20 720 > th dose independent rect. 23 19
170 265.87 temperature 20 10 > th dose independent rect. 1 4
177 265.98 radiation 1 10 < th dose independent rect. 21 23
186 266.06 radiation 1 30 < th dose dependent sin 7 NA
190 266.16 radiation 10 10 < th dose independent rect. 7 22
197 266.21 radiation 10 10 < th dose dependent rect. 21 23
199 266.24 temperature 20 720 > th dose independent sin 11 NA
216 266.45 temperature 25 270 < th dose independent sin 6 NA
236 266.68 temperature 25 270 > th dose independent rect. 24 16
239 266.74 temperature 20 720 > th dose independent rect. 16 17
254 266.88 temperature 25 270 > th dose independent rect. 6 10
282 267.25 temperature 20 720 < th dose independent rect. 24 3
346 267.96 temperature 20 720 < th dose independent sin 10 NA
358 268.10 temperature 20 720 > th dose independent rect. 17 11
386 268.43 temperature 25 270 > th dose independent rect. 4 12
471 269.35 temperature 15 720 > th dose dependent rect. 8 1
501 269.62 temperature 15 720 > th dose dependent rect. 6 3
512 269.68 temperature 10 720 > th dose dependent rect. 6 5
574 270.15 radiation 1 10 > th dose independent rect. 17 23
579 270.18 temperature 20 720 > th dose independent rect. 6 16
617 270.43 temperature 30 270 < th dose dependent rect. 1 22
637 270.57 atmosphere 1015 10 < th dose dependent rect. 8 21
670 270.89 radiation 1 10 < th dose independent rect. 23 23
728 271.49 radiation 10 10 < th dose dependent rect. 15 23
730 271.50 radiation 10 10 < th dose dependent rect. 13 23
731 271.50 radiation 10 10 < th dose dependent rect. 23 23
733 271.51 radiation 10 10 < th dose dependent no NA NA
761 271.67 radiation 10 10 < th dose dependent rect. 9 23
767 271.72 radiation 1 10 > th dose independent rect. 5 11
786 271.81 humidity 70 30 > th dose dependent rect. 23 6
788 271.83 temperature 20 270 > th dose independent rect. 6 22
793 271.88 atmosphere 995 10 > th dose dependent rect. 5 18
812 271.99 humidity 70 10 > th dose dependent rect. 8 21
813 271.99 radiation 10 10 < th dose dependent rect. 11 23
829 272.10 temperature 20 720 > th dose independent rect. 6 3
842 272.19 radiation 1 10 > th dose independent sin 8 NA
899 272.56 radiation 1 10 < th dose independent rect. 23 17
925 272.65 temperature 15 10 > th dose dependent rect. 1 4
944 272.77 radiation 1 10 > th dose independent no NA NA
945 272.77 radiation 1 10 < th dose independent no NA NA
946 272.77 radiation 1 10 > th dose independent rect. 5 14
982 272.77 radiation 1 10 < th dose independent rect. 11 21