Os03g0403100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DNA-directed RNA polymerase subunit.
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Os03g0403100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DNA-directed RNA polymerase subunit.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.94 | 0.304 | 10.2 | 1.19 | 0.914 | -0.824 | -0.29 | 1.52 | 0.21 | 18.6 | 24.83 | 4302 | -- | -- |
| 42.74 | 0.304 | 10.3 | 0.85 | 0.902 | -0.678 | -0.299 | -- | 0.187 | 18.6 | 22.97 | 4218 | -- | -- |
| 42.13 | 0.302 | 10.2 | 1.22 | 0.916 | -0.825 | -- | 1.58 | 0.214 | 18.5 | 24.8 | 4319 | -- | -- |
| 42.96 | 0.305 | 10.3 | 0.852 | 0.906 | -0.672 | -- | -- | 0.187 | 18.5 | 22.83 | 4236 | -- | -- |
| 85.06 | 0.43 | 10.2 | 1.12 | -- | -0.785 | -- | 0.924 | 0.242 | -- | 22.8 | 4259 | -- | -- |
| 56.45 | 0.352 | 10.3 | 0.593 | 0.927 | -- | -0.205 | -- | 0.0913 | 18.3 | -- | -- | -- | -- |
| 56.55 | 0.352 | 10.3 | 0.596 | 0.926 | -- | -- | -- | 0.0908 | 18.3 | -- | -- | -- | -- |
| 85.47 | 0.431 | 10.3 | 0.848 | -- | -0.7 | -- | -- | 0.169 | -- | 22.9 | 4255 | -- | -- |
| 58.36 | 0.356 | 10.3 | -- | 0.906 | -0.466 | -- | -- | -0.0261 | 18.5 | 27.9 | 4270 | -- | -- |
| 101.09 | 0.47 | 10.3 | 0.571 | -- | -- | -- | -- | 0.0708 | -- | -- | -- | -- | -- |
| 65.91 | 0.38 | 10.3 | -- | 0.918 | -- | -- | -- | 0.0244 | 18.3 | -- | -- | -- | -- |
| 101.06 | 0.468 | 10.3 | -- | -- | -0.456 | -- | -- | -0.0397 | -- | 28 | 4238 | -- | -- |
| 109.69 | 0.489 | 10.3 | -- | -- | -- | -- | -- | 0.00742 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.82 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 18 |
| 2 | 40.86 | temperature | 15 | 90 | > th | dose dependent | rect. | 15 | 18 |
| 7 | 41.33 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 16 |
| 8 | 41.37 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 19 |
| 22 | 41.80 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 17 |
| 23 | 41.80 | temperature | 25 | 4320 | > th | dose dependent | rect. | 12 | 21 |
| 24 | 41.81 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 45 | 41.88 | temperature | 25 | 4320 | > th | dose dependent | rect. | 12 | 16 |
| 73 | 41.91 | temperature | 25 | 4320 | > th | dose dependent | rect. | 14 | 5 |
| 83 | 41.92 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 97 | 41.93 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 3 |
| 104 | 41.93 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 21 |
| 113 | 41.94 | temperature | 25 | 4320 | > th | dose dependent | rect. | 12 | 8 |
| 125 | 41.95 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 148 | 41.96 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 10 |
| 199 | 41.99 | temperature | 25 | 4320 | > th | dose dependent | sin | 19 | NA |
| 200 | 41.99 | temperature | 25 | 4320 | > th | dose dependent | sin | 2 | NA |
| 328 | 42.10 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 329 | 42.10 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 9 |
| 332 | 42.11 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 341 | 42.12 | temperature | 25 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 381 | 42.22 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 447 | 42.44 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 476 | 42.53 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 12 |
| 479 | 42.54 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 9 |
| 524 | 42.78 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 549 | 42.83 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 10 |
| 550 | 42.84 | temperature | 25 | 4320 | < th | dose independent | rect. | 13 | 19 |
| 559 | 42.87 | temperature | 25 | 4320 | > th | dose independent | rect. | 14 | 18 |
| 568 | 42.91 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 569 | 42.91 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 8 |
| 597 | 42.95 | radiation | 20 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 640 | 43.00 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 19 |
| 655 | 43.01 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 20 |
| 675 | 43.02 | temperature | 25 | 4320 | > th | dose independent | sin | 6 | NA |
| 676 | 43.02 | temperature | 25 | 4320 | < th | dose independent | sin | 6 | NA |
| 792 | 43.07 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 15 |
| 807 | 43.08 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 830 | 43.09 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 16 |
| 832 | 43.09 | radiation | 30 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 992 | 43.18 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 14 |