Os03g0401900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os03g0401900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 143.48 | 0.563 | 7.9 | 0.00946 | 0.139 | 1.52 | -0.381 | 1.1 | -0.125 | 17.5 | 23.2 | 769 | -- | -- |
| 144.95 | 0.561 | 7.88 | 0.16 | 0.125 | 1.35 | -0.507 | -- | -0.105 | 18 | 23.41 | 750 | -- | -- |
| 143.83 | 0.559 | 7.9 | 0.00524 | 0.138 | 1.54 | -- | 1.16 | -0.128 | 17.6 | 23.15 | 765 | -- | -- |
| 145.49 | 0.562 | 7.88 | 0.154 | 0.138 | 1.34 | -- | -- | -0.0994 | 17.2 | 23.33 | 745 | -- | -- |
| 144.72 | 0.56 | 7.9 | -0.00298 | -- | 1.53 | -- | 1.18 | -0.133 | -- | 23.19 | 827 | -- | -- |
| 169.01 | 0.609 | 7.92 | -0.198 | 0.181 | -- | -0.109 | -- | -0.324 | 14 | -- | -- | -- | -- |
| 169.04 | 0.609 | 7.92 | -0.201 | 0.181 | -- | -- | -- | -0.325 | 13.6 | -- | -- | -- | -- |
| 146.42 | 0.564 | 7.87 | 0.152 | -- | 1.33 | -- | -- | -0.101 | -- | 23.4 | 792 | -- | -- |
| 146.04 | 0.563 | 7.88 | -- | 0.136 | 1.27 | -- | -- | -0.125 | 17 | 23.35 | 742 | -- | -- |
| 171.03 | 0.611 | 7.93 | -0.209 | -- | -- | -- | -- | -0.329 | -- | -- | -- | -- | -- |
| 170.11 | 0.61 | 7.92 | -- | 0.184 | -- | -- | -- | -0.303 | 13.7 | -- | -- | -- | -- |
| 146.95 | 0.565 | 7.88 | -- | -- | 1.26 | -- | -- | -0.127 | -- | 23.4 | 781 | -- | -- |
| 172.18 | 0.612 | 7.92 | -- | -- | -- | -- | -- | -0.306 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 140.83 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 2 | 140.95 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 11 |
| 3 | 141.15 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 4 | 141.21 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 5 | 141.30 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 6 |
| 6 | 141.30 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 8 | 141.38 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 9 | 141.48 | wind | 3.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 13 | 141.82 | wind | 3.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 16 | 141.93 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 19 | 142.12 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 24 | 20 |
| 20 | 142.13 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 24 | 142.27 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 28 | 142.40 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 30 | 142.46 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 34 | 142.72 | wind | 9.0 | 14400 | > th | dose independent | rect. | 6 | 6 |
| 37 | 142.73 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 6 |
| 46 | 142.87 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 48 | 142.88 | wind | 3.0 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 49 | 142.89 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 60 | 143.15 | temperature | 10.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 66 | 143.19 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 4 | 8 |
| 79 | 143.31 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 86 | 143.39 | wind | 9.0 | 14400 | < th | dose independent | rect. | 2 | 11 |
| 88 | 143.40 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 4 | 8 |
| 89 | 143.40 | temperature | 25.0 | 720 | < th | dose dependent | sin | 10 | NA |
| 96 | 143.47 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 21 | 10 |
| 103 | 143.50 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 3 |
| 114 | 143.60 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 7 |
| 116 | 143.61 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 127 | 143.78 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 22 | 10 |
| 148 | 143.96 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 7 | 5 |
| 153 | 143.97 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 158 | 144.00 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 188 | 144.17 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 238 | 144.41 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 258 | 144.50 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 6 |
| 291 | 144.66 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 292 | 144.66 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 304 | 144.69 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 321 | 144.76 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 6 |
| 332 | 144.80 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 9 |
| 354 | 144.87 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 14 |
| 376 | 144.95 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 12 |
| 391 | 144.99 | wind | 3.0 | 14400 | < th | dose dependent | sin | 7 | NA |
| 417 | 145.08 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 432 | 145.12 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 12 |
| 435 | 145.13 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 438 | 145.14 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 442 | 145.14 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 451 | 145.17 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 455 | 145.17 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 467 | 145.20 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 9 |
| 519 | 145.31 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 14 |
| 525 | 145.33 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 534 | 145.35 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 13 |
| 554 | 145.41 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 555 | 145.41 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 570 | 145.45 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 583 | 145.47 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 585 | 145.48 | wind | 1.0 | 43200 | > th | dose independent | rect. | 21 | 9 |
| 592 | 145.50 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 595 | 145.50 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 5 |
| 599 | 145.51 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 608 | 145.53 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 9 |
| 610 | 145.53 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 623 | 145.56 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 641 | 145.60 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 19 |
| 669 | 145.66 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 695 | 145.72 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 700 | 145.73 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 727 | 145.80 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 11 | 21 |
| 752 | 145.86 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 797 | 145.97 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 802 | 145.99 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 805 | 145.99 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 21 |
| 827 | 146.03 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 12 | 2 |
| 829 | 146.04 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 836 | 146.05 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 16 |
| 882 | 146.16 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 7 |
| 905 | 146.21 | temperature | 20.0 | 720 | < th | dose independent | rect. | 1 | 6 |
| 917 | 146.25 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 16 |
| 920 | 146.26 | temperature | 20.0 | 720 | > th | dose independent | sin | 8 | NA |
| 932 | 146.29 | temperature | 20.0 | 720 | < th | dose independent | sin | 7 | NA |
| 961 | 146.36 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 963 | 146.36 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 971 | 146.37 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 972 | 146.37 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 976 | 146.38 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 14 | 3 |