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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0401300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Sucrose synthase 2 (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase 2).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.5 (0.0332) R2 : 0.0996
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.497 (0.07) R2dN8 : 0.129 R2N8 : 0.0996
σ : 0.626
deviance : 179.77
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
139.95 0.556 6.5 -0.519 0.464 0.519 -1.34 0.572 0.534 19.8 29.84 1258 -- --
140 0.551 6.5 -0.631 0.454 0.581 -1.34 -- 0.55 19.8 30.1 1241 -- --
144.4 0.56 6.5 -0.503 0.47 0.506 -- 0.467 0.525 20.8 29.8 1264 -- --
144.43 0.56 6.51 -0.578 0.469 0.53 -- -- 0.526 20.8 30.07 1256 -- --
156.28 0.582 6.5 -0.524 -- 0.608 -- 0.488 0.503 -- 29.8 1129 -- --
157.08 0.588 6.53 -0.454 0.501 -- -1.11 -- 0.455 20.4 -- -- -- --
159.96 0.592 6.53 -0.426 0.508 -- -- -- 0.452 21.4 -- -- -- --
155.21 0.58 6.51 -0.619 -- 0.673 -- -- 0.423 -- 29.41 1079 -- --
153.59 0.577 6.51 -- 0.474 0.508 -- -- 0.569 20.7 29.82 1257 -- --
175.06 0.618 6.51 -0.423 -- -- -- -- 0.45 -- -- -- -- --
164.74 0.6 6.52 -- 0.507 -- -- -- 0.499 21.3 -- -- -- --
164.44 0.597 6.51 -- -- 0.619 -- -- 0.445 -- 28.93 1048 -- --
179.77 0.626 6.5 -- -- -- -- -- 0.497 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 134.12 radiation 1.0 270 < th dose independent rect. 5 20
2 134.14 precipitation 0.1 270 < th dose independent rect. 13 16
3 134.14 precipitation 0.1 270 < th dose dependent rect. 13 16
4 134.24 humidity 60.0 4320 < th dose dependent rect. 16 4
20 134.30 radiation 1.0 270 > th dose independent sin 18 NA
23 134.74 wind 9.0 270 < th dose independent rect. 5 8
24 134.76 temperature 10.0 270 > th dose independent rect. 5 8
25 134.76 atmosphere 995.0 270 > th dose independent rect. 5 8
26 134.76 atmosphere 1015.0 270 < th dose independent rect. 5 8
28 134.76 temperature 10.0 270 > th dose independent rect. 13 16
31 134.92 precipitation 0.1 270 < th dose independent rect. 5 8
32 134.92 precipitation 0.1 270 < th dose dependent rect. 5 8
33 134.97 humidity 50.0 270 > th dose independent rect. 5 8
38 134.99 atmosphere 995.0 270 > th dose independent rect. 13 16
39 135.13 wind 1.0 270 > th dose independent rect. 4 9
44 135.26 radiation 10.0 270 < th dose dependent rect. 9 16
45 135.27 radiation 1.0 270 > th dose independent rect. 13 5
46 135.27 wind 7.0 270 < th dose dependent rect. 1 4
57 135.29 radiation 1.0 270 < th dose dependent rect. 5 20
62 135.47 radiation 1.0 270 > th dose independent rect. 14 3
63 135.48 wind 3.0 270 < th dose independent rect. 1 4
64 135.49 wind 9.0 270 < th dose dependent rect. 24 6
66 135.51 radiation 10.0 270 < th dose dependent rect. 11 14
67 135.58 radiation 10.0 270 < th dose dependent rect. 15 10
77 135.80 precipitation 0.1 270 < th dose independent rect. 1 4
78 135.80 precipitation 0.1 270 < th dose dependent rect. 1 4
80 135.83 wind 3.0 270 < th dose independent rect. 24 6
86 135.92 wind 9.0 270 < th dose independent rect. 13 16
87 135.95 wind 9.0 270 < th dose independent rect. 5 20
91 136.08 atmosphere 995.0 90 > th dose dependent rect. 6 9
92 136.09 precipitation 0.1 270 < th dose independent rect. 1 16
93 136.09 precipitation 0.1 270 < th dose dependent rect. 1 16
95 136.13 precipitation 0.1 270 < th dose independent rect. 24 6
97 136.13 precipitation 0.1 270 < th dose dependent rect. 24 6
98 136.17 radiation 30.0 4320 > th dose independent rect. 16 16
105 136.25 radiation 30.0 4320 > th dose independent rect. 7 1
115 136.25 radiation 10.0 270 < th dose independent rect. 15 10
130 136.39 wind 9.0 270 < th dose independent rect. 6 18
131 136.40 radiation 1.0 270 > th dose independent rect. 15 1
136 136.42 radiation 40.0 90 < th dose independent rect. 15 15
141 136.51 humidity 70.0 4320 < th dose dependent rect. 18 1
142 136.51 humidity 50.0 270 > th dose dependent rect. 1 4
148 136.59 atmosphere 1015.0 270 < th dose dependent rect. 1 4
149 136.60 radiation 1.0 270 < th dose dependent rect. 1 4
151 136.61 humidity 70.0 4320 < th dose dependent rect. 18 13
174 136.69 humidity 60.0 4320 < th dose independent rect. 17 2
176 136.69 temperature 10.0 270 > th dose independent rect. 1 4
178 136.69 temperature 30.0 270 < th dose independent rect. 1 4
179 136.69 humidity 50.0 270 > th dose independent rect. 1 4
183 136.69 atmosphere 995.0 270 > th dose independent rect. 1 4
184 136.69 atmosphere 1010.0 270 < th dose independent rect. 1 4
186 136.69 radiation 20.0 270 < th dose independent rect. 1 4
201 136.69 temperature 10.0 270 > th dose independent rect. 5 20
202 136.69 radiation 30.0 270 < th dose dependent rect. 1 4
207 136.71 radiation 1.0 270 < th dose independent rect. 1 4
213 136.73 radiation 1.0 270 < th dose independent rect. 13 12
224 136.87 atmosphere 995.0 270 > th dose independent rect. 1 16
225 136.89 temperature 10.0 270 > th dose dependent rect. 1 4
228 136.90 humidity 50.0 270 > th dose dependent rect. 24 6
229 136.92 wind 9.0 270 < th dose independent rect. 17 8
230 136.93 atmosphere 1010.0 270 < th dose independent rect. 24 6
236 137.00 temperature 10.0 270 > th dose independent rect. 17 8
237 137.00 radiation 20.0 270 < th dose independent rect. 17 8
241 137.00 temperature 10.0 270 > th dose independent rect. 1 16
242 137.00 atmosphere 1015.0 270 < th dose independent rect. 1 16
246 137.01 radiation 40.0 270 < th dose dependent rect. 17 8
247 137.02 humidity 60.0 4320 > th dose independent rect. 17 3
251 137.03 wind 7.0 43200 > th dose dependent rect. 21 17
252 137.04 temperature 10.0 270 > th dose independent rect. 24 6
253 137.04 temperature 30.0 270 < th dose independent rect. 24 6
254 137.04 humidity 50.0 270 > th dose independent rect. 24 6
257 137.04 atmosphere 995.0 270 > th dose independent rect. 24 6
259 137.04 radiation 20.0 270 < th dose independent rect. 24 6
262 137.04 temperature 10.0 270 > th dose independent rect. 6 18
266 137.05 temperature 10.0 270 > th dose dependent rect. 24 6
267 137.05 atmosphere 995.0 10 > th dose dependent rect. 7 8
283 137.10 precipitation 0.1 270 < th dose independent rect. 5 20
284 137.10 precipitation 0.1 270 < th dose dependent rect. 5 20
296 137.18 precipitation 0.1 270 < th dose independent rect. 17 8
297 137.18 precipitation 0.1 270 < th dose dependent rect. 17 8
306 137.22 radiation 40.0 270 < th dose dependent rect. 24 6
311 137.27 humidity 50.0 270 > th dose independent rect. 17 8
315 137.30 precipitation 0.1 270 < th dose independent rect. 6 18
318 137.30 precipitation 0.1 270 < th dose dependent rect. 6 18
330 137.38 atmosphere 995.0 270 > th dose independent rect. 17 8
335 137.44 precipitation 0.1 10 < th dose independent rect. 15 16
336 137.44 precipitation 0.1 10 < th dose dependent rect. 15 16
349 137.52 wind 7.0 43200 > th dose dependent rect. 8 5
352 137.54 wind 7.0 43200 > th dose dependent rect. 1 13
359 137.56 atmosphere 1015.0 270 < th dose independent rect. 13 16
370 137.60 radiation 10.0 270 < th dose dependent sin 16 NA
373 137.61 radiation 1.0 270 > th dose independent rect. 11 8
384 137.61 radiation 20.0 4320 > th dose dependent rect. 6 2
398 137.62 wind 7.0 43200 > th dose dependent rect. 12 1
399 137.62 temperature 10.0 270 > th dose dependent rect. 5 8
441 137.70 atmosphere 1015.0 270 < th dose dependent rect. 24 6
444 137.71 precipitation 0.1 90 < th dose independent rect. 3 16
445 137.71 wind 7.0 43200 > th dose dependent sin 6 NA
448 137.71 precipitation 0.1 90 < th dose dependent rect. 3 16
465 137.78 radiation 20.0 1440 > th dose independent rect. 16 1
486 137.80 wind 1.0 90 > th dose independent rect. 19 20
487 137.80 wind 3.0 14400 < th dose dependent rect. 14 1
508 137.84 wind 1.0 270 > th dose independent rect. 13 15
516 137.88 wind 9.0 43200 < th dose independent sin 7 NA
542 137.96 atmosphere 1015.0 90 < th dose independent rect. 15 16
562 138.02 radiation 40.0 10 < th dose independent rect. 15 16
568 138.04 temperature 10.0 10 > th dose independent rect. 7 8
570 138.04 atmosphere 995.0 10 > th dose independent rect. 7 8
571 138.04 atmosphere 1015.0 10 < th dose independent rect. 7 8
572 138.04 temperature 10.0 10 > th dose independent rect. 15 16
588 138.05 precipitation 0.1 10 < th dose independent rect. 7 8
590 138.05 precipitation 0.1 10 < th dose dependent rect. 7 8
596 138.08 temperature 10.0 10 > th dose dependent rect. 15 16
597 138.09 humidity 50.0 270 > th dose independent rect. 13 16
602 138.12 wind 9.0 43200 < th dose independent rect. 21 17
603 138.13 temperature 10.0 90 > th dose dependent rect. 15 16
614 138.17 humidity 50.0 270 > th dose independent rect. 5 20
629 138.18 wind 1.0 270 > th dose independent rect. 11 8
631 138.19 wind 7.0 43200 > th dose independent rect. 1 13
636 138.20 atmosphere 995.0 10 > th dose independent rect. 15 16
653 138.23 temperature 30.0 270 < th dose independent rect. 5 8
654 138.23 wind 7.0 43200 > th dose independent rect. 22 16
658 138.24 wind 9.0 43200 > th dose independent rect. 9 4
659 138.24 temperature 10.0 90 > th dose independent rect. 19 8
660 138.24 temperature 30.0 90 < th dose independent rect. 19 8
661 138.24 humidity 50.0 90 > th dose independent rect. 19 8
663 138.24 atmosphere 995.0 90 > th dose independent rect. 19 8
664 138.24 radiation 1.0 90 < th dose independent rect. 19 8
669 138.24 temperature 10.0 90 > th dose independent rect. 3 16
670 138.24 atmosphere 1015.0 90 < th dose independent rect. 3 16
671 138.24 radiation 1.0 90 < th dose dependent rect. 19 8
677 138.25 precipitation 0.1 90 < th dose independent rect. 19 8
678 138.25 precipitation 0.1 90 < th dose dependent rect. 19 8
692 138.30 wind 9.0 90 < th dose independent rect. 19 8
697 138.32 humidity 50.0 270 > th dose independent rect. 6 18
711 138.36 wind 9.0 43200 < th dose independent rect. 4 9
722 138.38 wind 7.0 43200 < th dose independent rect. 1 13
725 138.39 humidity 80.0 270 < th dose independent rect. 13 4
744 138.41 wind 7.0 43200 > th dose independent rect. 12 1
746 138.41 temperature 15.0 270 > th dose independent rect. 11 8
755 138.43 wind 1.0 270 > th dose independent rect. 13 4
761 138.44 radiation 1.0 270 < th dose independent sin 17 NA
773 138.46 wind 7.0 43200 > th dose independent sin 6 NA
781 138.47 radiation 1.0 90 > th dose independent rect. 6 9
786 138.49 wind 9.0 43200 > th dose independent rect. 19 18
793 138.50 wind 9.0 43200 < th dose independent rect. 19 18
794 138.50 atmosphere 995.0 270 > th dose independent rect. 5 20
799 138.51 atmosphere 995.0 90 > th dose independent rect. 3 16
812 138.54 radiation 20.0 1440 < th dose independent rect. 16 1
814 138.54 wind 9.0 270 < th dose independent rect. 1 16
821 138.55 temperature 10.0 1440 > th dose independent rect. 8 8
824 138.55 temperature 10.0 1440 > th dose independent rect. 16 16
831 138.56 wind 9.0 43200 < th dose independent rect. 8 5
846 138.58 atmosphere 995.0 270 > th dose independent rect. 6 18
864 138.61 wind 7.0 43200 > th dose independent rect. 4 9
875 138.63 wind 9.0 270 < th dose independent rect. 17 21
881 138.64 wind 7.0 43200 > th dose independent rect. 6 7
885 138.65 wind 9.0 10 < th dose independent rect. 7 8
898 138.67 temperature 10.0 270 > th dose dependent rect. 14 3
927 138.71 wind 1.0 1440 > th dose independent rect. 4 1
939 138.73 wind 7.0 43200 < th dose independent rect. 12 1
940 138.73 atmosphere 1015.0 10 < th dose independent rect. 15 16
946 138.76 wind 1.0 270 > th dose independent rect. 17 8
947 138.76 temperature 30.0 270 < th dose independent rect. 17 8
949 138.76 atmosphere 995.0 90 > th dose dependent rect. 15 4
981 138.78 wind 3.0 14400 < th dose dependent rect. 14 4
986 138.79 temperature 10.0 270 > th dose dependent rect. 13 16
995 138.81 radiation 20.0 1440 < th dose independent rect. 16 10