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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0401100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11 (0.026) R2 : 0.777
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.1 (0.0641) R2dC : 0.537 R2C : 0.464
β3 : 1.18 (0.0783) R2dE : 0.122 R2E : 0.0783
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.788 (0.0559) R2dN8 : 0.139 R2N8 : 0.156
σ : 0.485
deviance : 108.23
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_____
C
peak time of C : 9.23
E
wheather : temperature
threshold : 22.9
memory length : 1289
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
98.57 0.466 11.1 -0.118 2.13 1.31 0.28 -2.34 0.734 9.27 23.8 1266 -- --
103.45 0.474 11 0.482 2.16 1.15 0.427 -- 0.815 8.97 21.76 1943 -- --
98.84 0.463 11.1 -0.13 2.12 1.31 -- -2.41 0.729 9.26 23.78 1265 -- --
101.53 0.469 11 0.523 2.1 1.11 -- -- 0.879 9.26 23.16 1263 -- --
340.2 0.859 11 -0.393 -- 1.32 -- -3.7 1.09 -- 28.31 5767 -- --
141.14 0.557 11 0.875 2.05 -- 0.289 -- 1.09 8.95 -- -- -- --
141.42 0.557 11 0.885 2.05 -- -- -- 1.09 8.94 -- -- -- --
344.61 0.865 11.1 0.61 -- 0.892 -- -- 0.884 -- 26.7 7208 -- --
108.23 0.485 11 -- 2.1 1.18 -- -- 0.788 9.23 22.9 1289 -- --
382.87 0.914 11 0.884 -- -- -- -- 1.11 -- -- -- -- --
162.07 0.596 11 -- 2.06 -- -- -- 0.993 8.91 -- -- -- --
348.49 0.869 11.1 -- -- 1.2 -- -- 0.675 -- 19.62 7242 -- --
403.47 0.938 11 -- -- -- -- -- 1.01 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 97.80 temperature 20 4320 > th dose dependent rect. 4 1
6 99.91 temperature 25 1440 > th dose dependent rect. 12 19
13 100.07 temperature 25 1440 > th dose dependent rect. 12 5
71 100.67 temperature 25 1440 > th dose dependent sin 17 NA
91 100.82 temperature 25 4320 < th dose independent rect. 2 10
112 100.98 humidity 90 43200 > th dose dependent rect. 23 1
133 101.11 temperature 25 4320 > th dose independent rect. 3 9
156 101.32 temperature 25 4320 < th dose independent rect. 22 14
164 101.37 temperature 25 1440 > th dose dependent rect. 21 21
190 101.46 temperature 25 1440 > th dose dependent no NA NA
191 101.47 temperature 25 4320 > th dose independent rect. 22 14
197 101.48 temperature 25 1440 > th dose dependent rect. 6 23
202 101.50 temperature 25 1440 > th dose dependent rect. 3 23
224 101.54 temperature 25 1440 > th dose dependent rect. 24 23
301 101.86 temperature 25 4320 < th dose independent sin 6 NA
391 102.17 temperature 25 4320 > th dose independent sin 6 NA
450 102.55 humidity 90 43200 > th dose dependent rect. 20 7
461 102.60 temperature 25 1440 > th dose independent rect. 10 21
493 102.79 temperature 25 4320 < th dose independent rect. 16 20
532 102.97 temperature 25 1440 > th dose independent rect. 18 22
533 102.97 radiation 1 14400 < th dose dependent rect. 4 1
560 103.07 temperature 25 4320 > th dose independent rect. 16 20
562 103.07 humidity 90 43200 > th dose dependent rect. 14 13
586 103.16 temperature 25 1440 < th dose independent rect. 9 22
593 103.18 temperature 25 1440 < th dose independent rect. 11 20
599 103.20 temperature 25 4320 < th dose independent rect. 21 21
607 103.22 temperature 25 1440 > th dose independent rect. 3 22
612 103.23 temperature 25 1440 > th dose independent sin 16 NA
658 103.30 wind 7 43200 > th dose dependent rect. 11 11
677 103.35 temperature 25 1440 < th dose independent rect. 3 22
697 103.40 temperature 20 4320 > th dose dependent sin 9 NA
698 103.41 temperature 25 1440 > th dose independent no NA NA
703 103.41 temperature 25 1440 > th dose independent rect. 6 23
717 103.43 temperature 25 1440 < th dose independent rect. 6 23
719 103.44 temperature 25 1440 > th dose independent rect. 11 15
739 103.48 temperature 25 1440 > th dose independent rect. 20 23
748 103.50 temperature 25 1440 < th dose independent sin 16 NA
754 103.51 humidity 90 43200 < th dose independent rect. 22 3
771 103.54 temperature 25 1440 < th dose independent no NA NA
781 103.54 humidity 90 43200 > th dose dependent sin 15 NA
802 103.57 humidity 90 43200 < th dose independent rect. 20 7
822 103.61 radiation 1 43200 > th dose independent rect. 9 1
823 103.61 radiation 1 43200 < th dose independent rect. 9 1
838 103.63 humidity 90 43200 < th dose independent rect. 19 9
848 103.64 wind 7 43200 > th dose dependent rect. 11 8
971 103.81 temperature 25 4320 > th dose independent rect. 9 1
973 103.81 temperature 30 720 < th dose independent rect. 16 3
982 103.81 radiation 1 43200 < th dose dependent rect. 6 11
988 103.83 humidity 90 43200 > th dose independent rect. 20 9
1000 103.84 radiation 1 43200 < th dose dependent rect. 8 7