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Os03g0399500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Chaperonin Cpn60/TCP-1 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.15 (0.0235) R2 : 0.82
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.23 (0.0698) R2dC : 0.537 R2C : 0.737
β3 : -1.28 (0.101) R2dE : 0.0852 R2E : 0.269
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.168 (0.0514) R2dN8 : 0.00793 R2N8 : -0.00736
σ : 0.438
deviance : 88.57
__
_____
C
peak time of C : 7.01
E
wheather : temperature
threshold : 19.05
memory length : 440
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
79.07 0.418 9.07 0.985 2.15 -1.58 0.701 3.27 0.424 7.26 20.53 361 -- --
84.99 0.429 9.13 0.381 2.18 -1.41 0.0513 -- 0.247 6.96 18.23 477 -- --
79.67 0.416 9.08 0.947 2.09 -1.62 -- 3.11 0.412 7.21 21.7 380 -- --
84.8 0.429 9.15 0.403 2.19 -1.46 -- -- 0.248 6.98 17.9 476 -- --
217.93 0.688 9.07 1.49 -- -3.46 -- 5.62 0.62 -- 24.36 511 -- --
117.49 0.508 9.19 0.0336 2.67 -- 0.27 -- -0.00117 6.89 -- -- -- --
117.67 0.508 9.19 0.0382 2.67 -- -- -- -0.002 6.88 -- -- -- --
235.81 0.715 9.19 0.633 -- -2.97 -- -- 0.324 -- 24.4 508 -- --
88.57 0.438 9.15 -- 2.23 -1.28 -- -- 0.168 7.01 19.05 440 -- --
490.69 1.04 9.25 0.0954 -- -- -- -- 0.0487 -- -- -- -- --
117.71 0.508 9.19 -- 2.67 -- -- -- -0.00625 6.87 -- -- -- --
245.94 0.73 9.2 -- -- -2.87 -- -- 0.24 -- 24.5 499 -- --
490.93 1.03 9.25 -- -- -- -- -- 0.0381 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 74.11 temperature 10 270 > th dose dependent rect. 22 22
4 75.06 temperature 15 270 > th dose dependent rect. 24 19
18 76.75 temperature 20 270 > th dose dependent rect. 13 22
31 77.89 humidity 90 14400 > th dose dependent rect. 22 1
32 77.99 humidity 90 14400 > th dose dependent rect. 21 3
45 78.60 wind 9 43200 < th dose independent rect. 2 13
53 78.98 wind 9 43200 > th dose independent rect. 2 13
56 79.04 wind 9 43200 > th dose independent rect. 24 15
66 79.22 wind 9 43200 > th dose independent rect. 7 8
68 79.26 wind 9 43200 > th dose independent rect. 19 20
76 79.42 wind 7 43200 > th dose dependent rect. 5 10
86 79.59 wind 9 43200 < th dose independent rect. 18 21
87 79.62 wind 9 43200 < th dose independent rect. 20 19
94 79.72 temperature 20 1440 > th dose dependent rect. 7 1
97 79.78 wind 3 43200 < th dose dependent rect. 8 1
101 79.87 wind 9 43200 > th dose independent rect. 9 5
108 79.98 radiation 1 14400 > th dose independent rect. 18 12
129 80.18 wind 9 43200 < th dose independent rect. 9 5
171 80.45 humidity 90 14400 > th dose dependent sin 16 NA
212 80.77 wind 1 43200 < th dose dependent rect. 1 1
240 81.09 temperature 20 270 > th dose dependent no NA NA
244 81.12 humidity 90 14400 > th dose dependent rect. 4 21
256 81.24 humidity 90 14400 < th dose independent rect. 17 8
274 81.42 radiation 1 14400 < th dose independent rect. 21 9
278 81.43 radiation 1 14400 > th dose independent rect. 4 2
291 81.45 temperature 10 270 > th dose dependent rect. 6 13
294 81.47 humidity 90 14400 < th dose independent rect. 17 10
299 81.49 wind 7 43200 > th dose dependent sin 3 NA
312 81.56 humidity 90 14400 < th dose independent rect. 21 2
320 81.58 radiation 1 14400 > th dose independent rect. 18 1
334 81.62 radiation 1 14400 < th dose independent rect. 4 2
352 81.74 wind 7 43200 > th dose dependent rect. 20 19
354 81.75 wind 9 43200 < th dose independent sin 3 NA
365 81.78 temperature 20 270 > th dose dependent rect. 6 23
376 81.87 humidity 90 14400 > th dose dependent rect. 14 21
382 81.89 humidity 90 14400 > th dose dependent rect. 9 23
394 81.92 humidity 90 14400 < th dose independent sin 16 NA
400 81.94 humidity 90 14400 > th dose dependent rect. 14 18
419 81.98 humidity 90 14400 < th dose independent rect. 9 18
421 81.98 wind 1 43200 > th dose dependent rect. 6 9
430 82.00 humidity 90 14400 > th dose dependent no NA NA
447 82.02 humidity 90 14400 > th dose dependent rect. 18 23
453 82.05 wind 9 43200 > th dose independent sin 2 NA
454 82.05 wind 3 43200 > th dose independent rect. 6 8
460 82.07 humidity 90 14400 > th dose independent rect. 21 3
522 82.27 humidity 90 14400 > th dose independent rect. 22 1
533 82.31 humidity 80 43200 < th dose dependent rect. 22 1
535 82.31 temperature 20 270 > th dose dependent rect. 4 23
546 82.35 humidity 90 14400 > th dose independent rect. 14 13
553 82.36 humidity 90 14400 > th dose independent rect. 9 18
555 82.36 wind 9 43200 < th dose dependent rect. 5 10
560 82.38 humidity 90 14400 > th dose independent rect. 17 10
573 82.45 humidity 90 14400 < th dose independent rect. 18 1
591 82.50 temperature 25 1440 > th dose dependent rect. 17 2
612 82.57 humidity 90 14400 > th dose independent sin 16 NA
618 82.61 wind 3 43200 < th dose independent rect. 6 6
635 82.67 temperature 20 720 > th dose dependent rect. 16 20
649 82.73 wind 3 43200 < th dose independent rect. 8 2
661 82.78 wind 3 43200 > th dose independent rect. 9 1
662 82.78 wind 3 43200 < th dose independent rect. 8 4
669 82.79 humidity 80 43200 > th dose independent rect. 24 3
691 82.85 humidity 90 14400 > th dose independent rect. 18 7
695 82.85 wind 3 43200 > th dose dependent rect. 6 1
705 82.89 wind 3 43200 < th dose independent rect. 6 8
730 82.96 humidity 80 43200 < th dose independent rect. 24 1
768 83.04 wind 1 43200 > th dose dependent rect. 9 1
792 83.08 humidity 80 43200 < th dose dependent rect. 21 4
796 83.09 wind 3 43200 < th dose independent rect. 6 4
800 83.09 wind 9 43200 > th dose independent rect. 23 22
808 83.10 wind 3 43200 > th dose independent rect. 6 4
811 83.10 wind 9 43200 > th dose independent rect. 2 19
845 83.19 temperature 20 1440 > th dose dependent rect. 17 16
879 83.27 temperature 20 270 > th dose dependent sin 20 NA
892 83.29 wind 3 43200 < th dose independent rect. 3 11
915 83.33 wind 9 43200 < th dose independent rect. 2 19
933 83.36 wind 9 43200 < th dose independent rect. 23 22
938 83.37 humidity 80 43200 < th dose independent rect. 23 4
940 83.37 humidity 90 14400 < th dose independent rect. 17 18
944 83.38 humidity 90 14400 < th dose independent rect. 24 23
945 83.38 wind 9 43200 > th dose dependent rect. 10 11
965 83.41 temperature 30 1440 < th dose dependent rect. 7 1
970 83.42 temperature 10 1440 > th dose dependent rect. 7 2
1000 83.49 wind 9 43200 < th dose dependent rect. 9 1