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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0397600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycoside hydrolase, family 17 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0268) R2 : 1.36e-07
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.000445 (0.0564) R2dN8 : 1.76e-07 R2N8 : 1.36e-07
σ : 0.505
deviance : 117
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
108.54 0.489 2.9 -0.00552 0.194 -2.49 -0.158 10.4 -0.00627 16.5 49.56 158 -- --
110.16 0.489 2.92 -0.162 0.15 1.41 -0.745 -- 0.00537 17.7 45 81 -- --
108.54 0.485 2.9 -0.0157 0.191 -3.15 -- 12.2 -0.0174 16.4 49.09 158 -- --
108.3 0.485 2.92 -0.122 0.152 1.88 -- -- 0.00946 17.1 45.01 146 -- --
110.18 0.489 2.9 -0.0527 -- -3.26 -- 12.9 -0.00532 -- 48.21 158 -- --
114.7 0.502 2.93 -0.0706 0.197 -- 0.0621 -- -0.00418 15.9 -- -- -- --
114.71 0.502 2.93 -0.0698 0.197 -- -- -- -0.00382 15.9 -- -- -- --
109.52 0.487 2.93 -0.158 -- 2.11 -- -- -0.00216 -- 45.04 146 -- --
108.71 0.486 2.93 -- 0.17 1.91 -- -- 0.0137 16.4 45 145 -- --
116.84 0.505 2.93 -0.0779 -- -- -- -- -0.00909 -- -- -- -- --
114.84 0.501 2.93 -- 0.199 -- -- -- 0.00395 15.9 -- -- -- --
110.17 0.489 2.93 -- -- 2.01 -- -- 0.0147 -- 45.02 146 -- --
117 0.505 2.93 -- -- -- -- -- -0.000445 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 103.20 radiation 1 90 < th dose independent rect. 10 5
2 103.20 radiation 1 90 < th dose dependent rect. 10 5
48 105.09 radiation 1 10 < th dose independent rect. 13 1
58 105.09 radiation 1 10 < th dose dependent rect. 13 1
75 105.37 humidity 80 90 > th dose dependent rect. 12 1
98 105.44 humidity 80 90 > th dose independent rect. 12 1
124 106.19 humidity 50 90 < th dose independent rect. 15 20
132 106.31 humidity 50 90 < th dose dependent sin 11 NA
144 106.58 wind 3 10 < th dose dependent rect. 14 2
145 106.70 humidity 50 30 < th dose independent sin 11 NA
146 106.70 radiation 1 1440 < th dose independent rect. 11 1
147 106.70 radiation 1 1440 < th dose dependent rect. 11 1
155 106.90 humidity 50 90 < th dose dependent rect. 15 20
170 107.31 humidity 50 90 < th dose independent rect. 15 3
212 107.40 wind 3 90 < th dose independent rect. 11 6
213 107.40 humidity 50 90 < th dose dependent rect. 15 3
297 107.66 wind 3 90 > th dose independent rect. 11 8
331 107.72 humidity 50 30 > th dose independent sin 11 NA
374 107.80 wind 3 90 < th dose independent rect. 11 8
403 107.91 wind 1 30 < th dose independent rect. 15 1
432 108.19 wind 3 90 > th dose independent rect. 11 10
443 108.28 wind 3 90 < th dose independent rect. 11 12
444 108.29 radiation 10 1440 < th dose dependent rect. 4 1
445 108.29 wind 3 10 < th dose dependent rect. 11 6
463 108.46 radiation 1 1440 > th dose independent rect. 4 1
473 108.46 radiation 1 1440 > th dose dependent rect. 4 1
481 108.46 radiation 10 1440 < th dose dependent rect. 21 8
489 108.50 radiation 1 1440 < th dose independent rect. 21 8
490 108.50 temperature 20 720 > th dose dependent rect. 6 1
495 108.53 radiation 1 1440 > th dose independent rect. 8 4
503 108.56 radiation 1 1440 < th dose independent rect. 4 1
519 108.68 temperature 15 720 > th dose dependent rect. 5 3
525 108.75 humidity 90 1440 > th dose independent rect. 1 1
529 108.76 humidity 90 4320 > th dose dependent rect. 5 2
540 108.81 wind 1 14400 > th dose independent rect. 8 1
541 108.82 temperature 30 30 > th dose independent rect. 14 5
559 108.84 wind 1 14400 < th dose independent rect. 8 1
595 108.91 humidity 90 14400 < th dose dependent rect. 1 1
598 108.92 humidity 50 43200 > th dose independent rect. 16 22
602 108.94 wind 3 90 > th dose independent sin 21 NA
611 108.97 wind 9 14400 > th dose dependent rect. 13 5
613 108.98 wind 3 90 > th dose independent rect. 11 12
614 108.99 humidity 50 43200 > th dose independent rect. 9 22
620 109.00 humidity 80 10 > th dose independent rect. 14 1
622 109.00 radiation 1 1440 > th dose independent rect. 11 1
623 109.00 wind 9 43200 > th dose independent rect. 13 4
624 109.00 humidity 50 43200 > th dose independent rect. 9 10
628 109.00 humidity 50 43200 > th dose independent rect. 9 20
645 109.02 wind 9 14400 > th dose independent rect. 15 1
659 109.02 humidity 50 43200 > th dose independent rect. 2 18
665 109.02 humidity 50 43200 > th dose independent rect. 22 22
671 109.03 humidity 50 43200 > th dose independent rect. 5 14
696 109.04 humidity 50 43200 > th dose independent no NA NA
735 109.04 humidity 50 43200 < th dose independent rect. 16 22
749 109.05 humidity 50 43200 > th dose independent rect. 10 2
765 109.05 humidity 50 43200 > th dose independent rect. 17 20
772 109.05 humidity 50 43200 < th dose dependent rect. 14 6
774 109.05 humidity 50 43200 < th dose dependent rect. 14 17
775 109.06 humidity 50 43200 > th dose independent sin 20 NA
777 109.06 humidity 50 43200 < th dose independent rect. 10 2
794 109.06 humidity 50 43200 < th dose dependent rect. 14 14
805 109.07 humidity 50 43200 > th dose independent rect. 13 23
831 109.08 wind 9 43200 > th dose dependent rect. 14 2
833 109.08 humidity 50 43200 < th dose dependent rect. 14 3
854 109.11 humidity 50 43200 < th dose dependent rect. 14 22
863 109.13 wind 9 43200 < th dose independent rect. 13 4
868 109.13 radiation 40 14400 > th dose independent rect. 14 18
869 109.13 humidity 50 43200 < th dose independent rect. 9 21
873 109.14 radiation 40 14400 > th dose independent rect. 14 2
883 109.14 humidity 50 43200 < th dose independent rect. 9 11
899 109.14 humidity 50 43200 < th dose independent rect. 9 19
903 109.14 humidity 50 43200 < th dose independent rect. 17 20
908 109.14 humidity 50 43200 < th dose independent rect. 13 23
947 109.16 humidity 50 43200 < th dose dependent sin 14 NA
958 109.17 humidity 50 43200 < th dose independent rect. 4 16
974 109.17 humidity 50 90 < th dose dependent rect. 17 23
976 109.18 humidity 50 43200 < th dose independent sin 18 NA
978 109.18 humidity 50 43200 < th dose independent no NA NA
983 109.18 humidity 50 43200 < th dose independent rect. 5 14