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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0396900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to PIMT.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.64 (0.0338) R2 : 0.217
β1 : 0.892 (0.124) R2dD : 0.0925 R2D : 0.0619
β2 : 0.733 (0.0863) R2dC : 0.124 R2C : 0.108
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.288 (0.0722) R2dN8 : 0.0366 R2N8 : 0.00552
σ : 0.636
deviance : 184.4
__
_____
C
peak time of C : 16.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
165.6 0.605 3.56 1.46 0.734 -0.725 1.44 1.42 0.592 17.2 25.8 949 -- --
167.74 0.603 3.59 1.07 0.705 -0.627 1.5 -- 0.51 17.3 25.5 953 -- --
170.65 0.608 3.55 1.51 0.757 -0.759 -- 1.61 0.612 17.4 25.9 940 -- --
173.12 0.613 3.6 1.09 0.712 -0.654 -- -- 0.481 17.2 25.91 997 -- --
193.89 0.649 3.54 1.45 -- -0.835 -- 1.3 0.654 -- 25.4 1133 -- --
179.26 0.628 3.64 0.879 0.726 -- 1.37 -- 0.28 16.3 -- -- -- --
184.4 0.636 3.64 0.892 0.733 -- -- -- 0.288 16.1 -- -- -- --
195.78 0.652 3.57 1.11 -- -0.757 -- -- 0.55 -- 25.6 1144 -- --
201.59 0.661 3.64 -- 0.7 -0.361 -- -- 0.307 16.9 25.5 953 -- --
213.54 0.683 3.64 0.863 -- -- -- -- 0.268 -- -- -- -- --
205.39 0.67 3.66 -- 0.715 -- -- -- 0.188 16.1 -- -- -- --
224.71 0.698 3.62 -- -- -0.518 -- -- 0.338 -- 25.4 1116 -- --
233.17 0.713 3.66 -- -- -- -- -- 0.173 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 164.21 temperature 25.0 720 > th dose independent rect. 11 6
3 164.59 humidity 90.0 270 > th dose dependent sin 17 NA
7 164.84 humidity 90.0 270 > th dose dependent rect. 12 14
11 164.98 temperature 25.0 720 < th dose independent rect. 3 19
19 165.19 humidity 80.0 1440 < th dose independent rect. 11 5
20 165.27 temperature 25.0 720 < th dose independent rect. 1 21
24 165.32 temperature 25.0 720 < th dose independent rect. 9 20
27 165.36 temperature 25.0 720 > th dose independent sin 21 NA
28 165.39 temperature 25.0 720 > th dose independent rect. 11 10
32 165.44 humidity 80.0 1440 > th dose independent rect. 11 6
66 165.85 radiation 1.0 720 < th dose dependent rect. 14 15
67 165.86 humidity 90.0 720 > th dose dependent rect. 19 2
71 165.90 radiation 1.0 1440 > th dose independent rect. 8 4
76 165.93 radiation 1.0 720 < th dose independent rect. 14 15
77 165.93 humidity 90.0 720 > th dose dependent rect. 17 5
80 165.95 temperature 20.0 720 > th dose dependent rect. 12 5
94 166.07 temperature 25.0 720 > th dose independent rect. 5 17
95 166.07 temperature 25.0 720 > th dose independent rect. 2 19
101 166.08 humidity 70.0 720 > th dose dependent rect. 10 19
102 166.09 temperature 25.0 720 < th dose independent sin 23 NA
104 166.09 radiation 1.0 720 > th dose independent rect. 11 19
172 166.51 humidity 80.0 1440 < th dose independent rect. 15 1
178 166.54 humidity 80.0 1440 > th dose independent rect. 15 1
193 166.63 temperature 25.0 720 < th dose independent rect. 4 22
197 166.64 radiation 1.0 720 < th dose independent rect. 14 13
204 166.65 radiation 1.0 1440 < th dose independent rect. 10 1
207 166.65 radiation 1.0 1440 < th dose dependent rect. 10 1
234 166.77 humidity 80.0 1440 > th dose independent rect. 13 4
258 166.85 temperature 25.0 720 > th dose independent rect. 11 23
263 166.86 humidity 70.0 1440 > th dose dependent rect. 11 5
277 166.90 radiation 1.0 720 > th dose independent rect. 11 7
279 166.90 humidity 80.0 1440 < th dose independent rect. 22 19
287 166.92 temperature 25.0 720 > th dose independent rect. 9 23
297 166.96 temperature 25.0 720 > th dose independent rect. 11 21
300 166.97 humidity 90.0 270 > th dose independent sin 15 NA
311 166.99 temperature 25.0 720 < th dose independent rect. 9 12
320 167.01 temperature 25.0 720 < th dose independent rect. 10 10
322 167.01 temperature 25.0 720 > th dose independent rect. 19 22
369 167.13 radiation 1.0 720 < th dose dependent rect. 23 20
373 167.14 humidity 90.0 270 > th dose independent rect. 12 14
393 167.19 humidity 90.0 90 < th dose independent rect. 12 23
402 167.21 radiation 1.0 1440 < th dose dependent rect. 13 4
409 167.23 humidity 90.0 30 > th dose dependent rect. 4 23
410 167.24 temperature 25.0 720 > th dose independent no NA NA
418 167.25 humidity 90.0 90 < th dose independent rect. 14 20
433 167.28 radiation 1.0 1440 < th dose dependent rect. 11 6
468 167.38 temperature 25.0 1440 < th dose independent rect. 11 1
481 167.40 temperature 25.0 720 < th dose independent no NA NA
533 167.50 humidity 90.0 90 > th dose independent sin 12 NA
550 167.53 humidity 80.0 1440 > th dose independent rect. 22 20
559 167.55 radiation 1.0 720 < th dose dependent sin 14 NA
578 167.60 radiation 1.0 1440 < th dose independent rect. 11 6
588 167.62 radiation 1.0 720 < th dose dependent rect. 21 23
594 167.64 radiation 1.0 1440 > th dose independent rect. 13 4
595 167.64 radiation 1.0 1440 < th dose independent rect. 13 4
628 167.70 humidity 70.0 720 > th dose dependent sin 15 NA
635 167.72 temperature 25.0 720 < th dose independent rect. 14 3
651 167.76 radiation 1.0 1440 < th dose independent rect. 8 4
654 167.76 radiation 1.0 1440 < th dose dependent rect. 8 4
686 167.81 temperature 25.0 720 < th dose independent rect. 13 6
701 167.85 radiation 1.0 720 < th dose independent sin 15 NA
718 167.89 humidity 80.0 1440 < th dose independent sin 23 NA
735 167.92 humidity 80.0 14400 < th dose dependent rect. 20 2
744 167.94 humidity 70.0 1440 > th dose dependent rect. 15 1
745 167.95 humidity 90.0 90 < th dose independent rect. 17 17
747 167.95 radiation 1.0 720 > th dose independent rect. 9 23
762 167.97 radiation 1.0 720 < th dose independent rect. 23 20
798 168.01 wind 5.0 4320 < th dose independent rect. 13 2
806 168.01 radiation 1.0 720 < th dose dependent rect. 23 23
810 168.03 radiation 1.0 720 > th dose independent sin 22 NA
811 168.03 atmosphere 1010.0 4320 < th dose independent rect. 3 1
817 168.04 atmosphere 1010.0 4320 > th dose independent rect. 3 1
836 168.07 humidity 80.0 720 > th dose independent rect. 10 19
859 168.11 temperature 25.0 720 > th dose independent rect. 14 23
866 168.13 humidity 50.0 14400 > th dose independent rect. 7 3
883 168.15 humidity 50.0 14400 > th dose independent rect. 18 16
890 168.16 temperature 20.0 720 > th dose dependent rect. 11 10
897 168.18 humidity 50.0 14400 > th dose independent rect. 16 1
915 168.19 humidity 90.0 90 > th dose independent rect. 15 19
918 168.20 precipitation 0.1 10 > th dose independent rect. 21 5
928 168.20 precipitation 0.1 10 > th dose dependent rect. 21 5
969 168.24 temperature 25.0 720 < th dose independent rect. 18 23
976 168.25 humidity 50.0 14400 > th dose independent rect. 23 11