FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0396300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.08 (0.0179) R2 : 0.00121
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0281 (0.0377) R2dN8 : 0.00157 R2N8 : 0.00121
σ : 0.337
deviance : 52.21
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
50.31 0.333 3.08 0.0505 0.0748 -0.25 0.108 0.634 -0.0223 12.1 1.05 16 -- --
50.63 0.334 3.07 0.0803 0.075 -0.174 0.148 -- -0.0145 11.9 1.05 16 -- --
50.34 0.333 3.08 0.0572 0.0756 -0.214 -- 0.585 -0.0203 11.7 1.056 16 -- --
50.72 0.334 3.07 0.0867 0.0744 -0.167 -- -- -0.0142 11.4 1.1 16 -- --
50.69 0.333 3.08 0.0574 -- -0.198 -- 0.576 -0.0213 -- 1.021 16 -- --
51.57 0.337 3.07 0.102 0.075 -- 0.0899 -- -0.0169 9.2 -- -- -- --
51.59 0.336 3.07 0.105 0.0761 -- -- -- -0.017 8.75 -- -- -- --
51.06 0.334 3.08 0.0863 -- -0.154 -- -- -0.015 -- 1.1 16 -- --
50.91 0.334 3.08 -- 0.0742 -0.175 -- -- -0.0236 11.4 1.051 16 -- --
51.92 0.337 3.08 0.105 -- -- -- -- -0.0164 -- -- -- -- --
51.88 0.337 3.08 -- 0.0764 -- -- -- -0.0287 8.65 -- -- -- --
51.24 0.333 3.08 -- -- -0.192 -- -- -0.0246 -- 1.068 16 -- --
52.21 0.337 3.08 -- -- -- -- -- -0.0281 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 46.14 radiation 1.0 43200 < th dose dependent rect. 3 1
3 46.28 atmosphere 1005.0 90 > th dose dependent rect. 2 1
13 46.40 wind 9.0 1440 < th dose independent rect. 3 1
14 46.40 temperature 10.0 1440 > th dose independent rect. 3 1
17 46.40 temperature 30.0 1440 < th dose independent rect. 3 1
21 46.40 humidity 50.0 1440 > th dose independent rect. 3 1
30 46.40 atmosphere 995.0 1440 > th dose independent rect. 3 1
31 46.40 radiation 1.0 1440 < th dose independent rect. 3 1
51 46.40 temperature 10.0 1440 > th dose independent rect. 4 23
63 46.42 atmosphere 1000.0 30 > th dose independent rect. 3 23
64 46.42 temperature 20.0 30 > th dose dependent rect. 2 1
66 46.44 temperature 20.0 30 > th dose independent rect. 2 1
67 46.44 atmosphere 1000.0 30 > th dose independent rect. 2 1
70 46.44 atmosphere 995.0 30 > th dose dependent rect. 2 1
72 46.45 wind 3.0 30 < th dose independent rect. 2 1
73 46.45 wind 7.0 30 < th dose dependent rect. 2 1
77 46.46 wind 3.0 30 < th dose dependent rect. 2 1
81 46.47 temperature 10.0 30 > th dose independent rect. 2 1
83 46.47 temperature 30.0 30 < th dose independent rect. 2 1
84 46.47 humidity 50.0 30 > th dose independent rect. 2 1
88 46.47 atmosphere 1010.0 30 < th dose independent rect. 2 1
90 46.47 radiation 1.0 30 < th dose independent rect. 2 1
95 46.47 precipitation 0.1 30 < th dose independent rect. 2 1
96 46.47 temperature 10.0 30 > th dose independent rect. 3 23
97 46.47 humidity 50.0 30 > th dose dependent rect. 2 1
100 46.47 radiation 1.0 30 < th dose dependent rect. 2 1
105 46.47 precipitation 0.1 30 < th dose dependent rect. 2 1
107 46.48 humidity 90.0 30 > th dose independent rect. 2 1
113 46.53 atmosphere 1015.0 30 < th dose dependent rect. 2 1
116 46.57 temperature 30.0 30 < th dose dependent rect. 2 1
117 46.58 wind 1.0 30 > th dose independent rect. 2 1
133 46.67 precipitation 0.1 30 < th dose independent rect. 3 23
136 46.67 precipitation 0.1 30 < th dose dependent rect. 3 23
182 47.17 wind 9.0 30 < th dose independent rect. 3 23
197 47.69 humidity 50.0 30 > th dose independent rect. 3 23
210 48.04 wind 1.0 10 < th dose independent rect. 13 14
244 48.21 wind 1.0 90 < th dose dependent rect. 12 4
249 48.28 humidity 90.0 90 < th dose independent rect. 2 1
252 48.34 wind 1.0 90 < th dose independent rect. 12 4
256 48.38 wind 1.0 10 < th dose independent rect. 7 20
276 48.50 temperature 30.0 30 < th dose independent rect. 3 23
304 48.69 wind 1.0 90 < th dose independent rect. 12 1
305 48.69 wind 1.0 10 < th dose independent rect. 13 5
313 48.70 wind 1.0 90 < th dose dependent rect. 12 1
324 48.74 wind 1.0 10 < th dose dependent rect. 14 4
353 48.80 wind 1.0 10 < th dose dependent rect. 14 2
392 48.87 radiation 30.0 30 < th dose dependent rect. 3 23
430 48.96 wind 1.0 30 < th dose dependent rect. 13 14
432 48.97 wind 1.0 10 > th dose independent sin 18 NA
446 48.99 wind 1.0 10 < th dose dependent rect. 7 11
451 49.00 atmosphere 1015.0 30 < th dose independent rect. 3 23
453 49.01 wind 1.0 10 < th dose dependent rect. 7 9
470 49.03 wind 9.0 90 < th dose dependent rect. 12 15
487 49.06 wind 1.0 10 < th dose independent sin 18 NA
512 49.10 temperature 25.0 270 > th dose independent rect. 23 4
533 49.14 radiation 30.0 10 < th dose dependent rect. 14 12
536 49.15 wind 1.0 10 < th dose independent rect. 7 11
544 49.16 radiation 10.0 30 < th dose independent rect. 3 23
604 49.20 humidity 90.0 90 < th dose independent rect. 1 3
644 49.24 wind 1.0 10 < th dose independent rect. 21 6
656 49.25 radiation 30.0 10 < th dose independent rect. 14 12
684 49.29 atmosphere 1000.0 10 > th dose independent rect. 16 10
706 49.32 temperature 15.0 90 > th dose independent rect. 3 9
729 49.35 radiation 30.0 90 < th dose independent rect. 15 10
736 49.36 wind 7.0 90 < th dose independent rect. 3 9
777 49.40 temperature 10.0 10 > th dose independent rect. 16 10
780 49.40 temperature 10.0 10 > th dose independent rect. 2 14
782 49.40 atmosphere 1015.0 10 < th dose independent rect. 2 14
783 49.40 wind 9.0 90 < th dose independent rect. 12 15
784 49.40 precipitation 0.1 90 < th dose independent rect. 12 15
787 49.40 precipitation 0.1 90 < th dose dependent rect. 12 15
788 49.40 temperature 10.0 30 > th dose dependent rect. 3 23
792 49.41 precipitation 0.1 10 < th dose independent rect. 16 10
794 49.41 precipitation 0.1 10 < th dose dependent rect. 16 10
800 49.42 atmosphere 995.0 10 > th dose independent rect. 2 14
801 49.42 precipitation 0.1 10 < th dose independent rect. 2 14
804 49.42 temperature 25.0 270 > th dose dependent rect. 23 4
808 49.42 precipitation 0.1 10 < th dose dependent rect. 2 14
821 49.44 humidity 50.0 10 > th dose independent rect. 16 10
837 49.45 wind 9.0 10 < th dose independent rect. 16 10
847 49.46 atmosphere 995.0 90 > th dose independent rect. 3 9
848 49.46 atmosphere 1015.0 90 < th dose independent rect. 3 9
851 49.46 temperature 10.0 90 > th dose independent rect. 12 15
889 49.48 humidity 50.0 10 > th dose independent rect. 2 14
895 49.48 wind 3.0 10 < th dose dependent rect. 22 5
897 49.48 temperature 10.0 30 > th dose dependent rect. 3 9
907 49.49 wind 9.0 90 < th dose dependent rect. 3 9
946 49.51 wind 1.0 10 < th dose independent sin 21 NA
979 49.53 precipitation 0.1 90 < th dose independent rect. 3 9
980 49.53 temperature 10.0 1440 > th dose independent rect. 17 10
983 49.53 radiation 30.0 1440 < th dose independent rect. 17 10
989 49.53 temperature 10.0 1440 > th dose independent rect. 3 14
996 49.53 precipitation 0.1 90 < th dose dependent rect. 3 9
999 49.54 humidity 50.0 90 > th dose independent rect. 3 9
1000 49.54 wind 9.0 10 < th dose independent rect. 2 14