FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0396200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.54 (0.0308) R2 : 0.505
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.72 (0.0801) R2dC : 0.502 R2C : 0.5
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.124 (0.0648) R2dN8 : 0.00515 R2N8 : 0.00279
σ : 0.581
deviance : 154.1
__
_____
C
peak time of C : 19
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
123.06 0.521 5.51 0.581 2 -0.556 1.26 0.673 0.0531 18.5 89.53 120 -- --
125.32 0.521 5.5 0.525 2.01 -0.561 1.47 -- 0.047 18.4 89.26 120 -- --
126.35 0.524 5.51 0.576 2.03 -0.56 -- 1.03 0.055 18.5 89.45 170 -- --
130.68 0.532 5.5 0.507 2.01 -0.553 -- -- 0.0498 18.4 89.16 116 -- --
212.75 0.679 5.44 0.898 -- 1.34 -- 2.65 -0.041 -- 75 560 -- --
140.06 0.555 5.52 0.603 1.72 -- 1.43 -- -0.0636 19 -- -- -- --
145.37 0.565 5.52 0.576 1.72 -- -- -- -0.06 19 -- -- -- --
208.73 0.673 5.5 0.436 -- 1.45 -- -- -0.148 -- 72.86 525 -- --
137.41 0.546 5.51 -- 2.02 -0.587 -- -- 0.00031 18.4 89.71 115 -- --
301.68 0.812 5.48 0.541 -- -- -- -- -0.0916 -- -- -- -- --
154.1 0.581 5.54 -- 1.72 -- -- -- -0.124 19 -- -- -- --
213.14 0.68 5.51 -- -- 1.51 -- -- -0.206 -- 71.54 531 -- --
309.4 0.821 5.5 -- -- -- -- -- -0.152 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 112.20 precipitation 0.1 1440 < th dose independent rect. 10 3
2 112.20 precipitation 0.1 1440 < th dose dependent rect. 10 3
3 113.32 radiation 1.0 270 < th dose independent sin 8 NA
5 113.58 radiation 1.0 270 < th dose dependent sin 7 NA
7 113.82 radiation 1.0 270 > th dose independent sin 8 NA
10 114.12 precipitation 0.1 1440 < th dose independent rect. 8 5
11 114.12 precipitation 0.1 1440 < th dose dependent rect. 8 5
13 114.15 radiation 1.0 270 > th dose independent rect. 5 5
26 114.29 temperature 15.0 270 > th dose independent rect. 17 17
27 114.31 temperature 15.0 270 > th dose independent rect. 6 15
45 114.75 temperature 15.0 90 > th dose dependent rect. 20 16
46 114.85 humidity 90.0 90 < th dose independent rect. 19 17
49 115.07 humidity 90.0 10 < th dose independent rect. 7 5
55 115.61 temperature 15.0 10 > th dose dependent rect. 20 16
65 115.90 temperature 20.0 270 > th dose independent rect. 6 4
67 116.00 radiation 1.0 270 < th dose independent rect. 21 18
71 116.14 radiation 1.0 270 < th dose independent rect. 21 14
75 116.31 temperature 15.0 270 > th dose independent rect. 16 9
78 116.35 temperature 15.0 270 > th dose independent rect. 5 21
99 117.08 atmosphere 1010.0 270 < th dose independent rect. 16 9
102 117.12 radiation 1.0 270 < th dose dependent rect. 21 20
105 117.22 humidity 70.0 90 > th dose dependent rect. 23 9
118 117.47 wind 9.0 270 < th dose independent rect. 10 20
119 117.48 humidity 50.0 270 > th dose dependent rect. 21 9
122 117.55 atmosphere 1015.0 270 < th dose independent rect. 6 15
132 117.74 radiation 1.0 270 < th dose dependent rect. 21 14
139 117.90 humidity 80.0 90 > th dose dependent rect. 23 18
140 117.92 humidity 70.0 30 > th dose dependent sin 6 NA
142 117.93 precipitation 0.1 270 < th dose independent rect. 6 4
144 117.93 precipitation 0.1 270 < th dose dependent rect. 6 4
146 117.96 temperature 30.0 270 < th dose independent rect. 6 4
151 118.05 humidity 50.0 270 > th dose independent rect. 6 4
157 118.12 wind 9.0 270 < th dose independent rect. 6 4
159 118.14 atmosphere 995.0 270 > th dose independent rect. 6 4
160 118.14 atmosphere 1015.0 270 < th dose independent rect. 6 4
161 118.14 temperature 10.0 270 > th dose independent rect. 10 20
162 118.14 humidity 80.0 90 > th dose dependent rect. 23 16
180 118.43 temperature 15.0 1440 > th dose independent rect. 8 5
182 118.46 atmosphere 1015.0 270 < th dose independent rect. 17 17
188 118.52 wind 7.0 270 < th dose independent rect. 21 9
192 118.55 wind 9.0 270 < th dose independent rect. 11 18
204 118.62 temperature 30.0 270 < th dose independent rect. 5 6
206 118.66 humidity 90.0 90 < th dose independent rect. 23 13
220 118.79 temperature 15.0 270 > th dose independent rect. 8 23
237 118.90 humidity 50.0 270 > th dose independent rect. 5 6
238 118.90 precipitation 0.1 270 < th dose independent rect. 5 6
239 118.90 precipitation 0.1 270 < th dose dependent rect. 5 6
246 118.96 precipitation 0.1 270 < th dose independent rect. 10 20
247 118.96 radiation 40.0 270 < th dose dependent rect. 21 9
248 118.96 precipitation 0.1 270 < th dose dependent rect. 10 20
249 118.97 radiation 1.0 1440 > th dose independent rect. 10 1
262 118.98 wind 9.0 270 < th dose independent rect. 10 7
263 118.98 temperature 10.0 270 > th dose independent rect. 21 9
264 118.98 temperature 30.0 270 < th dose independent rect. 21 9
265 118.98 humidity 50.0 270 > th dose independent rect. 21 9
268 118.98 atmosphere 995.0 270 > th dose independent rect. 21 9
269 118.98 radiation 20.0 270 < th dose independent rect. 21 9
286 119.07 temperature 10.0 270 > th dose dependent rect. 10 7
294 119.16 humidity 50.0 270 > th dose independent rect. 17 17
295 119.17 temperature 10.0 270 > th dose dependent rect. 6 4
298 119.19 wind 9.0 270 < th dose independent rect. 5 6
300 119.20 atmosphere 995.0 270 > th dose independent rect. 5 6
301 119.20 atmosphere 1015.0 270 < th dose independent rect. 5 6
303 119.20 temperature 10.0 270 > th dose independent rect. 11 18
314 119.29 atmosphere 995.0 270 > th dose independent rect. 17 17
316 119.29 temperature 15.0 270 > th dose independent rect. 15 22
325 119.38 precipitation 0.1 270 < th dose independent rect. 17 17
329 119.38 precipitation 0.1 270 < th dose dependent rect. 17 17
347 119.48 precipitation 0.1 270 < th dose independent rect. 10 7
348 119.48 precipitation 0.1 270 < th dose dependent rect. 10 7
358 119.55 temperature 10.0 270 > th dose independent rect. 10 7
359 119.55 atmosphere 1015.0 270 < th dose independent rect. 10 7
392 119.69 wind 9.0 270 < th dose independent rect. 17 17
404 119.79 radiation 1.0 270 < th dose dependent rect. 2 12
410 119.84 wind 9.0 270 < th dose independent rect. 9 22
423 119.92 humidity 90.0 90 < th dose independent sin 6 NA
432 119.95 humidity 90.0 90 < th dose dependent rect. 20 15
433 119.96 precipitation 0.1 270 < th dose independent rect. 11 18
435 119.96 precipitation 0.1 270 < th dose dependent rect. 11 18
484 120.15 precipitation 0.1 270 < th dose independent rect. 6 15
485 120.15 precipitation 0.1 270 < th dose dependent rect. 6 15
503 120.25 wind 9.0 270 < th dose independent rect. 6 15
504 120.25 temperature 30.0 270 < th dose independent rect. 17 17
509 120.26 radiation 1.0 270 < th dose independent rect. 1 14
514 120.28 humidity 60.0 270 > th dose independent rect. 7 2
538 120.37 atmosphere 995.0 270 > th dose independent rect. 6 15
573 120.51 precipitation 0.1 270 < th dose independent rect. 21 9
574 120.51 precipitation 0.1 270 < th dose dependent rect. 21 9
584 120.58 wind 1.0 270 > th dose independent rect. 10 7
594 120.63 wind 1.0 270 > th dose independent rect. 6 4
598 120.64 atmosphere 1010.0 270 < th dose independent rect. 7 2
650 120.85 radiation 1.0 10 > th dose independent rect. 7 5
654 120.86 humidity 90.0 90 < th dose dependent sin 8 NA
690 120.99 radiation 40.0 270 < th dose independent rect. 6 4
696 121.03 humidity 90.0 90 > th dose independent rect. 23 18
713 121.09 humidity 80.0 90 > th dose dependent rect. 3 14
737 121.17 temperature 10.0 90 > th dose dependent rect. 11 20
745 121.20 atmosphere 1010.0 30 < th dose independent rect. 18 9
758 121.26 humidity 90.0 90 > th dose independent rect. 23 20
766 121.28 temperature 10.0 10 > th dose dependent rect. 7 5
793 121.41 humidity 80.0 90 > th dose dependent rect. 3 16
811 121.48 temperature 10.0 270 > th dose dependent rect. 17 8
822 121.56 radiation 1.0 270 > th dose independent rect. 10 7
837 121.59 wind 9.0 10 < th dose independent rect. 12 19
853 121.63 wind 9.0 270 < th dose dependent rect. 10 7
854 121.63 temperature 10.0 270 > th dose dependent rect. 9 20
855 121.64 radiation 30.0 270 < th dose independent rect. 15 10
891 121.72 wind 1.0 270 > th dose independent rect. 5 6
910 121.77 wind 1.0 10 > th dose independent rect. 7 5
911 121.77 humidity 90.0 10 < th dose dependent rect. 20 16
920 121.80 wind 9.0 10 < th dose independent rect. 7 5
925 121.82 humidity 80.0 10 < th dose independent rect. 4 8
946 121.88 radiation 30.0 4320 < th dose independent rect. 3 4
953 121.90 precipitation 0.1 10 < th dose independent rect. 7 5
955 121.90 precipitation 0.1 10 < th dose dependent rect. 7 5
998 122.03 humidity 90.0 90 > th dose independent rect. 23 13