Os03g0395300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF827, plant family protein.
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Os03g0395300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF827, plant family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.74 | 0.36 | 8.5 | 0.591 | 0.556 | -0.47 | -0.243 | 1.4 | 0.633 | 0.707 | 10 | 985 | -- | -- |
| 62.24 | 0.367 | 8.51 | 0.508 | 0.544 | -0.471 | 0.0242 | -- | 0.605 | 0.464 | 9.996 | 982 | -- | -- |
| 58.97 | 0.358 | 8.5 | 0.595 | 0.559 | -0.473 | -- | 1.31 | 0.631 | 0.65 | 9.998 | 985 | -- | -- |
| 62.2 | 0.367 | 8.52 | 0.496 | 0.552 | -0.454 | -- | -- | 0.59 | 0.645 | 9.881 | 987 | -- | -- |
| 69.15 | 0.389 | 8.52 | 0.443 | -- | -0.669 | -- | 0.509 | 0.517 | -- | 9.998 | 985 | -- | -- |
| 67.18 | 0.384 | 8.53 | 0.427 | 0.51 | -- | -0.195 | -- | 0.515 | 2.38 | -- | -- | -- | -- |
| 67.31 | 0.384 | 8.53 | 0.433 | 0.509 | -- | -- | -- | 0.516 | 2.3 | -- | -- | -- | -- |
| 66.42 | 0.38 | 8.52 | 0.447 | -- | -0.627 | -- | -- | 0.546 | -- | 1.833e-06 | 183 | -- | -- |
| 68.13 | 0.384 | 8.51 | -- | 0.537 | -0.401 | -- | -- | 0.559 | 1.47 | 36.13 | 1029 | -- | -- |
| 82.68 | 0.425 | 8.52 | 0.454 | -- | -- | -- | -- | 0.528 | -- | -- | -- | -- | -- |
| 72.24 | 0.398 | 8.54 | -- | 0.517 | -- | -- | -- | 0.468 | 2.31 | -- | -- | -- | -- |
| 71.73 | 0.394 | 8.53 | -- | -- | -0.67 | -- | -- | 0.505 | -- | -5.314 | 168 | -- | -- |
| 88.12 | 0.438 | 8.53 | -- | -- | -- | -- | -- | 0.478 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.23 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 11 |
| 17 | 54.65 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 22 | 54.86 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 4 |
| 24 | 54.89 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 4 |
| 27 | 54.92 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 1 |
| 29 | 54.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 51 | 55.07 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 64 | 55.19 | wind | 1 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 77 | 55.39 | wind | 1 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 88 | 55.62 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 96 | 55.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 110 | 55.86 | wind | 1 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 118 | 55.88 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 155 | 56.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 174 | 56.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 196 | 56.45 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 240 | 56.70 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 267 | 56.87 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 269 | 56.87 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 311 | 57.08 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 319 | 57.10 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 358 | 57.28 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 20 |
| 373 | 57.32 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 9 |
| 434 | 57.51 | humidity | 50 | 270 | > th | dose dependent | rect. | 12 | 19 |
| 450 | 57.57 | humidity | 50 | 90 | > th | dose dependent | rect. | 12 | 21 |
| 475 | 57.62 | radiation | 10 | 720 | < th | dose dependent | rect. | 11 | 13 |
| 494 | 57.66 | radiation | 10 | 720 | < th | dose dependent | rect. | 13 | 11 |
| 524 | 57.76 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 529 | 57.76 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 565 | 57.87 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 17 | 10 |
| 603 | 57.95 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 630 | 58.03 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 776 | 58.36 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 840 | 58.48 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 887 | 58.54 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 948 | 58.65 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 12 |
| 952 | 58.66 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 4 |
| 997 | 58.72 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 20 |