Os03g0394800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0394800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 108.69 | 0.49 | 10.8 | 1.18 | 0.704 | 1.26 | 0.407 | 0.997 | 0.231 | 10.5 | 24.7 | 3173 | -- | -- |
| 109.59 | 0.488 | 10.8 | 1.45 | 0.714 | 1.29 | 0.476 | -- | 0.3 | 10.4 | 24.6 | 3166 | -- | -- |
| 109.36 | 0.487 | 10.8 | 1.19 | 0.702 | 1.25 | -- | 1.03 | 0.23 | 10.6 | 24.68 | 3173 | -- | -- |
| 110.25 | 0.489 | 10.8 | 1.49 | 0.697 | 1.31 | -- | -- | 0.319 | 10.6 | 24.64 | 3173 | -- | -- |
| 130.79 | 0.533 | 10.8 | 1.28 | -- | 1.4 | -- | 0.95 | 0.24 | -- | 24.71 | 3718 | -- | -- |
| 151.7 | 0.577 | 10.9 | 0.988 | 0.744 | -- | 0.378 | -- | -0.0544 | 10.7 | -- | -- | -- | -- |
| 152.29 | 0.578 | 10.9 | 1 | 0.741 | -- | -- | -- | -0.053 | 10.7 | -- | -- | -- | -- |
| 131.99 | 0.535 | 10.8 | 1.55 | -- | 1.45 | -- | -- | 0.309 | -- | 24.76 | 3738 | -- | -- |
| 160.37 | 0.59 | 10.8 | -- | 0.596 | 0.693 | -- | -- | 0.116 | 10.5 | 23.28 | 2410 | -- | -- |
| 186.22 | 0.638 | 10.9 | 0.989 | -- | -- | -- | -- | -0.0571 | -- | -- | -- | -- | -- |
| 178.85 | 0.626 | 10.9 | -- | 0.734 | -- | -- | -- | -0.165 | 10.6 | -- | -- | -- | -- |
| 183.92 | 0.632 | 10.8 | -- | -- | 0.923 | -- | -- | 0.067 | -- | 24.7 | 2299 | -- | -- |
| 212.05 | 0.68 | 10.9 | -- | -- | -- | -- | -- | -0.167 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 104.24 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 6 |
| 4 | 104.51 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 9 | 104.84 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 6 |
| 21 | 105.55 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 31 | 106.05 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 49 | 106.46 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 5 |
| 76 | 106.81 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 78 | 106.85 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 79 | 106.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 102 | 107.17 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 10 |
| 109 | 107.24 | temperature | 25 | 4320 | < th | dose independent | sin | 13 | NA |
| 122 | 107.31 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 126 | 107.35 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 129 | 107.37 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 6 |
| 130 | 107.38 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 132 | 107.38 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 10 |
| 159 | 107.51 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 202 | 107.72 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 258 | 107.93 | temperature | 10 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 270 | 107.98 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 3 |
| 285 | 108.03 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 3 |
| 298 | 108.08 | temperature | 20 | 4320 | > th | dose dependent | sin | 13 | NA |
| 378 | 108.33 | temperature | 10 | 4320 | > th | dose dependent | sin | 14 | NA |
| 390 | 108.37 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 416 | 108.43 | temperature | 30 | 4320 | < th | dose dependent | sin | 14 | NA |
| 433 | 108.46 | temperature | 25 | 4320 | > th | dose independent | sin | 14 | NA |
| 520 | 108.72 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 526 | 108.73 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 527 | 108.74 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 13 |
| 795 | 109.41 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |