Os03g0393700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase S10, serine carboxypeptidase family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0393700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Peptidase S10, serine carboxypeptidase family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.32 | 0.327 | 10.4 | 1.05 | 0.785 | 1 | -0.217 | -0.0217 | 0.192 | 21.7 | 20.25 | 2715 | -- | -- |
| 48.32 | 0.324 | 10.4 | 1.05 | 0.785 | 1.01 | -0.217 | -- | 0.193 | 21.7 | 20.25 | 2713 | -- | -- |
| 48.5 | 0.324 | 10.4 | 1.06 | 0.786 | 1 | -- | -0.0261 | 0.192 | 21.7 | 20.3 | 2710 | -- | -- |
| 48.5 | 0.324 | 10.4 | 1.06 | 0.786 | 1.01 | -- | -- | 0.194 | 21.7 | 20.28 | 2710 | -- | -- |
| 79.67 | 0.416 | 10.4 | 1.26 | -- | 0.827 | -- | -0.178 | 0.182 | -- | 21.8 | 918 | -- | -- |
| 69.75 | 0.392 | 10.4 | 1.59 | 0.806 | -- | -0.202 | -- | 0.456 | 22 | -- | -- | -- | -- |
| 69.91 | 0.392 | 10.4 | 1.6 | 0.807 | -- | -- | -- | 0.456 | 22 | -- | -- | -- | -- |
| 79.79 | 0.416 | 10.4 | 1.27 | -- | 0.859 | -- | -- | 0.169 | -- | 21.8 | 919 | -- | -- |
| 50.68 | 0.332 | 10.5 | -- | 0.793 | 1.55 | -- | -- | -0.0604 | 21.9 | 17.9 | 47520 | -- | -- |
| 109.07 | 0.488 | 10.3 | 1.61 | -- | -- | -- | -- | 0.457 | -- | -- | -- | -- | -- |
| 137.44 | 0.548 | 10.4 | -- | 0.813 | -- | -- | -- | 0.278 | 22.1 | -- | -- | -- | -- |
| 88.29 | 0.438 | 10.5 | -- | -- | 1.55 | -- | -- | -0.0687 | -- | 17.95 | 47520 | -- | -- |
| 177.5 | 0.622 | 10.4 | -- | -- | -- | -- | -- | 0.278 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.99 | temperature | 15 | 720 | > th | dose dependent | rect. | 22 | 16 |
| 3 | 48.13 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 16 |
| 6 | 48.32 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 7 | 48.34 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 23 | 48.46 | temperature | 15 | 720 | > th | dose dependent | sin | 5 | NA |
| 39 | 48.52 | radiation | 20 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 45 | 48.54 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 46 | 48.54 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 47 | 48.54 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 17 |
| 48 | 48.54 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 49 | 48.54 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 71 | 48.58 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 11 |
| 93 | 48.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 5 |
| 94 | 48.64 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 6 |
| 96 | 48.65 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 16 |
| 98 | 48.65 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 100 | 48.66 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 104 | 48.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 120 | 48.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 6 |
| 122 | 48.68 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 9 |
| 132 | 48.70 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 138 | 48.71 | temperature | 20 | 4320 | > th | dose independent | sin | 12 | NA |
| 151 | 48.72 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 2 |
| 198 | 48.79 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 201 | 48.79 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 14 |
| 220 | 48.81 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 14 |
| 239 | 48.83 | temperature | 20 | 4320 | < th | dose independent | sin | 11 | NA |
| 253 | 48.84 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 271 | 48.85 | radiation | 1 | 14400 | < th | dose dependent | rect. | 24 | 8 |
| 286 | 48.86 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 296 | 48.87 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 10 |
| 306 | 48.88 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 358 | 48.91 | radiation | 1 | 14400 | < th | dose dependent | rect. | 24 | 12 |
| 365 | 48.92 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 8 |
| 391 | 48.94 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 412 | 48.95 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 442 | 48.97 | radiation | 1 | 14400 | < th | dose dependent | sin | 7 | NA |
| 479 | 49.00 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 491 | 49.01 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 507 | 49.02 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 519 | 49.03 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 3 | 3 |
| 561 | 49.06 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 567 | 49.07 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 6 |
| 585 | 49.08 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 18 |
| 598 | 49.09 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 642 | 49.11 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 19 | 7 |
| 656 | 49.12 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 665 | 49.12 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 689 | 49.13 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 22 |
| 692 | 49.13 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 715 | 49.14 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 732 | 49.15 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 834 | 49.18 | atmosphere | 1005 | 43200 | > th | dose dependent | sin | 12 | NA |
| 903 | 49.20 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 15 |
| 961 | 49.22 | atmosphere | 1010 | 43200 | > th | dose dependent | sin | 7 | NA |