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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0392600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase S10, serine carboxypeptidase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.14 (0.0526) R2 : 0.329
β1 : -0.834 (0.199) R2dD : 0.0286 R2D : 0.0226
β2 : 1.27 (0.135) R2dC : 0.142 R2C : 0.0669
β3 : -1.43 (0.162) R2dE : 0.13 R2E : 0.0796
β4 : -3.03 (0.526) R2dD*C : 0.0497 R2D*C : 0.0355
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.489 (0.112) R2dN8 : 0.0374 R2N8 : 0.0207
σ : 0.983
deviance : 445.4
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_____
C
peak time of C : 21.2
E
wheather : temperature
threshold : 19.17
memory length : 173
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7.45
open length of G : 21.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
445.35 0.992 4.14 -0.827 1.27 -1.4 -3.05 0.134 -0.488 21.2 19.13 170 7.47 21.4
445.4 0.983 4.14 -0.834 1.27 -1.43 -3.03 -- -0.489 21.2 19.17 173 7.45 21.4
477.45 1.02 4.14 -0.706 1.31 -1.56 -- -0.213 -0.466 21 19.11 184 7.32 21.5
477.59 1.02 4.14 -0.688 1.31 -1.55 -- -- -0.471 21 19.13 184 7.33 21.5
546.56 1.09 4.1 -0.606 -- -1.47 -- 0.577 -0.422 -- 19.2 120 6.95 23.5
510.92 1.06 4.15 -1.29 1.01 -- -3.09 -- -0.567 22.6 -- -- -- --
550.12 1.1 4.15 -1.16 1.02 -- -- -- -0.559 22.8 -- -- -- --
547.66 1.09 4.08 -0.629 -- -1.62 -- -- -0.369 -- 19.17 132 6.78 23.5
489.77 1.03 4.14 -- 1.34 -1.59 -- -- -0.395 20.9 19.1 184 7.35 21.5
614.69 1.16 4.12 -1.14 -- -- -- -- -0.553 -- -- -- -- --
585.83 1.13 4.12 -- 1.01 -- -- -- -0.43 22.7 -- -- -- --
557.95 1.1 4.06 -- -- -1.77 -- -- -0.292 -- 19.16 133 6.8 23.5
649.17 1.19 4.09 -- -- -- -- -- -0.426 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 457.56 temperature 20.0 270 > th dose independent rect. 7 21
2 458.08 temperature 15.0 90 > th dose dependent rect. 20 9
6 459.66 temperature 20.0 270 > th dose independent rect. 8 19
11 460.77 temperature 20.0 90 > th dose independent rect. 21 8
97 468.60 temperature 20.0 10 > th dose independent rect. 22 14
122 469.86 temperature 20.0 10 > th dose independent rect. 20 21
126 469.96 temperature 20.0 10 > th dose independent rect. 22 19
146 471.03 temperature 20.0 10 > th dose independent rect. 22 16
161 472.01 temperature 30.0 270 < th dose dependent rect. 16 15
162 472.12 temperature 20.0 90 > th dose independent rect. 21 17
234 474.85 atmosphere 1000.0 90 > th dose independent rect. 5 4
239 474.96 atmosphere 995.0 90 > th dose dependent rect. 5 4
242 475.01 wind 1.0 30 > th dose independent rect. 12 23
244 475.05 wind 1.0 30 > th dose independent rect. 5 6
249 475.10 temperature 10.0 1440 > th dose independent rect. 6 6
252 475.10 atmosphere 995.0 1440 > th dose independent rect. 6 6
253 475.10 temperature 10.0 1440 > th dose independent rect. 12 18
264 475.25 temperature 25.0 90 < th dose dependent rect. 16 19
273 475.38 humidity 50.0 14400 > th dose independent rect. 6 3
294 475.75 radiation 20.0 90 < th dose independent rect. 5 4
341 476.37 temperature 20.0 270 < th dose dependent sin 10 NA
343 476.38 temperature 20.0 90 < th dose independent rect. 16 20
357 476.52 temperature 20.0 270 < th dose independent rect. 16 14
404 476.92 temperature 20.0 270 < th dose dependent rect. 2 21
409 476.97 wind 1.0 270 > th dose independent rect. 4 3
425 477.09 temperature 20.0 270 < th dose independent rect. 9 21
462 477.36 atmosphere 1010.0 90 < th dose independent rect. 5 4
468 477.40 humidity 90.0 270 < th dose independent rect. 5 2
474 477.47 radiation 40.0 90 < th dose independent rect. 9 20
512 477.81 temperature 20.0 90 < th dose independent sin 8 NA
513 477.81 humidity 70.0 90 > th dose independent rect. 5 4
517 477.85 temperature 20.0 90 < th dose independent rect. 20 16
520 477.86 temperature 20.0 270 < th dose independent sin 11 NA
523 477.87 temperature 20.0 10 < th dose independent rect. 17 19
525 477.89 radiation 20.0 10 < th dose independent rect. 6 3
535 477.99 temperature 25.0 720 < th dose dependent rect. 21 1
562 478.20 atmosphere 1005.0 30 > th dose independent rect. 11 18
581 478.30 temperature 20.0 270 > th dose dependent rect. 22 1
594 478.38 temperature 30.0 720 < th dose dependent rect. 19 5
609 478.46 precipitation 0.1 90 < th dose independent rect. 5 4
611 478.46 precipitation 0.1 90 < th dose dependent rect. 5 4
620 478.54 wind 5.0 90 < th dose independent rect. 5 4
637 478.63 atmosphere 995.0 270 > th dose dependent rect. 5 1
653 478.70 radiation 40.0 90 < th dose dependent rect. 5 4
655 478.71 temperature 10.0 90 > th dose independent rect. 5 4
671 478.75 temperature 20.0 270 < th dose dependent no NA NA
715 478.99 temperature 20.0 270 < th dose dependent rect. 19 23
722 479.03 temperature 15.0 4320 > th dose independent rect. 12 1
751 479.17 radiation 1.0 90 > th dose independent sin 10 NA
752 479.17 wind 1.0 30 > th dose independent rect. 5 4
762 479.23 humidity 90.0 10 < th dose independent rect. 5 4
766 479.26 wind 9.0 90 < th dose independent rect. 9 20
769 479.27 radiation 1.0 270 > th dose independent rect. 18 13
773 479.28 atmosphere 995.0 30 > th dose dependent rect. 5 6
777 479.29 temperature 20.0 10 < th dose independent sin 7 NA
780 479.30 wind 5.0 270 < th dose independent rect. 5 1
798 479.40 radiation 1.0 90 > th dose independent rect. 4 5
814 479.45 temperature 20.0 270 < th dose independent rect. 1 23
826 479.49 radiation 10.0 270 < th dose independent rect. 5 1
828 479.50 atmosphere 1010.0 270 < th dose independent rect. 5 1
830 479.51 temperature 10.0 1440 > th dose independent rect. 6 4
833 479.51 atmosphere 995.0 1440 > th dose independent rect. 6 4
834 479.51 atmosphere 1015.0 1440 < th dose independent rect. 6 4
835 479.51 temperature 10.0 1440 > th dose independent rect. 10 20
845 479.55 temperature 20.0 10 < th dose independent rect. 20 16
858 479.60 temperature 10.0 270 > th dose dependent rect. 5 2
875 479.68 radiation 1.0 270 > th dose independent rect. 5 2
892 479.72 atmosphere 995.0 270 > th dose independent rect. 7 22
895 479.73 temperature 10.0 30 > th dose dependent rect. 11 18
927 479.86 temperature 20.0 270 < th dose independent rect. 23 23
937 479.91 humidity 70.0 270 > th dose independent rect. 5 2
948 479.99 temperature 20.0 270 < th dose independent no NA NA
958 480.03 precipitation 0.1 270 < th dose independent rect. 5 2
959 480.03 precipitation 0.1 270 < th dose dependent rect. 5 2
978 480.11 temperature 20.0 270 < th dose independent rect. 19 23
985 480.14 atmosphere 1000.0 10 > th dose dependent rect. 6 3
994 480.17 temperature 30.0 30 < th dose independent rect. 11 18