Os03g0391700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Helix-loop-helix DNA-binding domain containing protein.
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Os03g0391700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Helix-loop-helix DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.72 | 0.44 | 10.5 | 0.767 | 1.76 | -1.24 | 0.366 | 2.9 | 0.387 | 21 | 22.05 | 15 | -- | -- |
| 94.02 | 0.455 | 10.6 | 0.272 | 1.76 | -1 | -0.0196 | -- | 0.234 | 21.1 | 22 | 14 | -- | -- |
| 88.14 | 0.437 | 10.5 | 0.721 | 1.76 | -1.22 | -- | 2.71 | 0.375 | 21 | 22.1 | 14 | -- | -- |
| 93.99 | 0.452 | 10.6 | 0.277 | 1.77 | -1 | -- | -- | 0.235 | 21.1 | 22 | 12 | -- | -- |
| 259.03 | 0.754 | 10.5 | 0.844 | -- | -1.64 | -- | 2.85 | 0.443 | -- | 20.57 | 7 | -- | -- |
| 109.9 | 0.491 | 10.6 | 0.0687 | 1.86 | -- | -0.108 | -- | 0.0717 | 21.9 | -- | -- | -- | -- |
| 109.95 | 0.491 | 10.6 | 0.073 | 1.86 | -- | -- | -- | 0.072 | 21.9 | -- | -- | -- | -- |
| 264.89 | 0.758 | 10.5 | 0.427 | -- | -1.72 | -- | -- | 0.324 | -- | 16.59 | 2 | -- | -- |
| 95.87 | 0.459 | 10.6 | -- | 1.77 | -0.916 | -- | -- | 0.192 | 21.2 | 22 | 12 | -- | -- |
| 316.73 | 0.832 | 10.6 | 0.093 | -- | -- | -- | -- | 0.0714 | -- | -- | -- | -- | -- |
| 110.09 | 0.491 | 10.6 | -- | 1.86 | -- | -- | -- | 0.0638 | 21.9 | -- | -- | -- | -- |
| 269.32 | 0.764 | 10.5 | -- | -- | -1.53 | -- | -- | 0.262 | -- | 17.48 | 2 | -- | -- |
| 316.96 | 0.831 | 10.6 | -- | -- | -- | -- | -- | 0.0611 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.40 | temperature | 20 | 30 | > th | dose dependent | rect. | 5 | 18 |
| 3 | 86.24 | temperature | 20 | 30 | > th | dose dependent | rect. | 5 | 20 |
| 56 | 88.80 | radiation | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 69 | 89.16 | radiation | 30 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 70 | 89.20 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 74 | 89.21 | temperature | 25 | 270 | > th | dose dependent | rect. | 13 | 22 |
| 83 | 89.27 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 84 | 89.28 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 93 | 89.43 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 96 | 89.45 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 104 | 89.53 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 112 | 89.59 | wind | 7 | 14400 | < th | dose independent | rect. | 10 | 11 |
| 123 | 89.71 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 5 |
| 148 | 89.80 | wind | 7 | 14400 | > th | dose independent | rect. | 10 | 11 |
| 150 | 89.82 | wind | 7 | 14400 | < th | dose independent | rect. | 12 | 4 |
| 161 | 89.93 | wind | 7 | 14400 | < th | dose independent | rect. | 5 | 16 |
| 177 | 90.10 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 181 | 90.11 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 184 | 90.13 | wind | 7 | 14400 | > th | dose independent | rect. | 5 | 16 |
| 196 | 90.25 | wind | 5 | 14400 | > th | dose dependent | rect. | 5 | 16 |
| 213 | 90.26 | humidity | 80 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 218 | 90.28 | wind | 7 | 14400 | < th | dose independent | sin | 22 | NA |
| 219 | 90.28 | wind | 7 | 14400 | > th | dose independent | rect. | 12 | 4 |
| 227 | 90.31 | wind | 5 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 234 | 90.34 | wind | 7 | 14400 | < th | dose independent | rect. | 11 | 7 |
| 248 | 90.38 | wind | 5 | 14400 | > th | dose dependent | rect. | 10 | 11 |
| 279 | 90.43 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 292 | 90.48 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 303 | 90.53 | wind | 7 | 14400 | > th | dose independent | sin | 22 | NA |
| 339 | 90.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 340 | 90.59 | radiation | 40 | 43200 | > th | dose independent | sin | 10 | NA |
| 352 | 90.62 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 408 | 90.67 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 418 | 90.70 | wind | 7 | 14400 | < th | dose independent | rect. | 5 | 13 |
| 420 | 90.71 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 421 | 90.71 | wind | 7 | 14400 | > th | dose independent | rect. | 10 | 8 |
| 424 | 90.71 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 462 | 90.78 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 480 | 90.80 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 483 | 90.80 | wind | 5 | 14400 | > th | dose dependent | rect. | 5 | 13 |
| 487 | 90.81 | wind | 5 | 14400 | > th | dose dependent | sin | 23 | NA |
| 551 | 90.90 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 553 | 90.91 | wind | 7 | 14400 | < th | dose independent | rect. | 10 | 21 |
| 558 | 90.92 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 567 | 90.93 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 573 | 90.94 | temperature | 25 | 10 | > th | dose independent | rect. | 5 | 18 |
| 578 | 90.95 | wind | 7 | 14400 | > th | dose independent | rect. | 5 | 13 |
| 599 | 90.96 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 616 | 90.98 | radiation | 40 | 43200 | < th | dose independent | rect. | 17 | 19 |
| 693 | 91.06 | wind | 7 | 14400 | > th | dose independent | rect. | 10 | 21 |
| 703 | 91.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 712 | 91.08 | wind | 7 | 14400 | < th | dose independent | rect. | 20 | 22 |
| 723 | 91.10 | wind | 7 | 14400 | < th | dose independent | rect. | 17 | 23 |
| 729 | 91.11 | wind | 7 | 14400 | > th | dose independent | rect. | 20 | 22 |
| 769 | 91.14 | wind | 7 | 14400 | > th | dose independent | rect. | 20 | 20 |
| 770 | 91.14 | radiation | 40 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 809 | 91.18 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 833 | 91.19 | wind | 7 | 14400 | > th | dose independent | rect. | 17 | 23 |
| 863 | 91.23 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 891 | 91.24 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 894 | 91.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 898 | 91.25 | wind | 5 | 14400 | > th | dose dependent | rect. | 10 | 8 |
| 952 | 91.29 | humidity | 90 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 967 | 91.31 | wind | 7 | 14400 | < th | dose independent | rect. | 20 | 20 |
| 971 | 91.31 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 7 |
| 982 | 91.32 | radiation | 30 | 43200 | > th | dose dependent | sin | 8 | NA |
| 988 | 91.33 | temperature | 20 | 30 | > th | dose dependent | sin | 19 | NA |
| 989 | 91.33 | temperature | 10 | 720 | > th | dose dependent | sin | 0 | NA |