Os03g0391400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phospholipase D nu-2 (Fragment).
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Os03g0391400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phospholipase D nu-2 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 243.87 | 0.734 | 7.25 | -1.44 | 1.1 | -0.621 | 0.939 | -0.00548 | -0.0475 | 8.68 | 20.02 | 89 | -- | -- |
| 243.87 | 0.727 | 7.25 | -1.44 | 1.1 | -0.621 | 0.936 | -- | -0.0475 | 8.67 | 20.02 | 88 | -- | -- |
| 245.91 | 0.73 | 7.25 | -1.42 | 1.07 | -0.617 | -- | 0.404 | -0.0343 | 8.7 | 20.26 | 108 | -- | -- |
| 246.39 | 0.731 | 7.25 | -1.41 | 1.08 | -0.613 | -- | -- | -0.044 | 8.71 | 20.03 | 109 | -- | -- |
| 260.65 | 0.752 | 7.27 | -1.57 | -- | -1.04 | -- | 0.00664 | 0.00851 | -- | 8.26 | 818 | -- | -- |
| 255.18 | 0.749 | 7.27 | -1.52 | 0.967 | -- | 0.969 | -- | -0.101 | 7.15 | -- | -- | -- | -- |
| 257.67 | 0.752 | 7.27 | -1.5 | 0.969 | -- | -- | -- | -0.103 | 7.14 | -- | -- | -- | -- |
| 258.47 | 0.749 | 7.26 | -1.5 | -- | -1.26 | -- | -- | -0.00156 | -- | 3.498 | 857 | -- | -- |
| 298.34 | 0.804 | 7.23 | -- | 1.1 | -0.672 | -- | -- | 0.0834 | 8.85 | 20 | 107 | -- | -- |
| 307.29 | 0.819 | 7.29 | -1.48 | -- | -- | -- | -- | -0.0859 | -- | -- | -- | -- | -- |
| 316.72 | 0.832 | 7.23 | -- | 0.954 | -- | -- | -- | 0.0637 | 7.25 | -- | -- | -- | -- |
| 302.91 | 0.811 | 7.22 | -- | -- | -1.28 | -- | -- | 0.206 | -- | 10.05 | 826 | -- | -- |
| 364.96 | 0.892 | 7.25 | -- | -- | -- | -- | -- | 0.0781 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 220.63 | temperature | 30 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 2 | 220.74 | temperature | 30 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 9 | 221.11 | temperature | 25 | 14400 | > th | dose independent | rect. | 24 | 8 |
| 13 | 221.20 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 11 |
| 14 | 221.20 | temperature | 30 | 14400 | < th | dose independent | rect. | 24 | 13 |
| 15 | 221.20 | temperature | 30 | 14400 | < th | dose independent | rect. | 21 | 16 |
| 17 | 221.21 | temperature | 30 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 25 | 221.22 | temperature | 25 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 84 | 221.62 | temperature | 25 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 88 | 221.68 | temperature | 25 | 14400 | > th | dose dependent | rect. | 23 | 10 |
| 89 | 221.70 | temperature | 30 | 14400 | < th | dose independent | sin | 7 | NA |
| 92 | 221.75 | temperature | 30 | 14400 | > th | dose independent | sin | 7 | NA |
| 97 | 221.80 | temperature | 25 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 99 | 221.83 | temperature | 25 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 134 | 221.98 | temperature | 30 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 306 | 222.63 | temperature | 30 | 14400 | > th | dose dependent | sin | 4 | NA |
| 462 | 222.93 | temperature | 30 | 14400 | > th | dose dependent | no | NA | NA |
| 608 | 223.09 | temperature | 30 | 14400 | > th | dose dependent | rect. | 14 | 23 |
| 620 | 223.16 | temperature | 25 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 646 | 223.21 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 779 | 223.28 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 23 |
| 780 | 223.29 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 781 | 223.29 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 11 |
| 783 | 223.29 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 13 |
| 990 | 223.47 | temperature | 25 | 14400 | > th | dose dependent | sin | 10 | NA |