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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0391300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Phospholipase D alpha 1 (EC 3.1.4.4) (PLD alpha 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.43 (0.0381) R2 : 0.529
β1 : 2.07 (0.14) R2dD : 0.238 R2D : 0.279
β2 : 0.824 (0.101) R2dC : 0.0776 R2C : 0.0239
β3 : -0.904 (0.07) R2dE : 0.179 R2E : 0.134
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.469 (0.0813) R2dN8 : 0.0442 R2N8 : 0.0661
σ : 0.716
deviance : 233.34
__
_____
C
peak time of C : 4.91
E
wheather : radiation
threshold : 0.6259
memory length : 10
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
229.45 0.712 4.43 2.09 0.852 -0.932 1.26 -0.508 -0.448 4.72 0.6259 10 -- --
229.59 0.706 4.43 2.05 0.827 -0.847 1.3 -- -0.47 5.37 0.08017 10 -- --
232.6 0.716 4.43 2.08 0.823 -0.895 -- -0.338 -0.466 4.96 0.6259 10 -- --
233.34 0.716 4.43 2.07 0.824 -0.904 -- -- -0.469 4.91 0.6259 10 -- --
267.19 0.765 4.44 2.12 -- -0.795 -- -0.341 -0.439 -- 0.64 6 -- --
250.51 0.742 4.41 2.12 1.23 -- 0.766 -- -0.441 8.71 -- -- -- --
252.42 0.744 4.41 2.15 1.23 -- -- -- -0.441 8.78 -- -- -- --
267.12 0.765 4.45 2.11 -- -0.795 -- -- -0.485 -- 0.1051 6 -- --
343.1 0.863 4.47 -- 1.19 -1.18 -- -- -0.671 3.8 0.001793 45 -- --
338.28 0.859 4.44 2.15 -- -- -- -- -0.431 -- -- -- -- --
374.22 0.905 4.46 -- 1.24 -- -- -- -0.68 8.65 -- -- -- --
383.97 0.916 4.5 -- -- -0.823 -- -- -0.72 -- 0.1051 6 -- --
460.34 1 4.49 -- -- -- -- -- -0.67 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 216.40 radiation 1.0 30 > th dose independent rect. 12 18
2 216.83 atmosphere 1000.0 90 > th dose independent rect. 19 9
3 217.04 temperature 10.0 30 > th dose dependent rect. 9 3
4 217.09 temperature 15.0 10 > th dose independent rect. 6 23
6 217.15 radiation 1.0 10 > th dose independent rect. 12 21
8 217.55 atmosphere 1015.0 10 < th dose dependent rect. 5 1
12 217.85 wind 7.0 10 < th dose independent rect. 5 1
14 217.85 temperature 10.0 10 > th dose independent rect. 5 1
16 217.85 temperature 30.0 10 < th dose independent rect. 5 1
17 217.85 humidity 50.0 10 > th dose independent rect. 5 1
20 217.85 atmosphere 995.0 10 > th dose independent rect. 5 1
21 217.85 atmosphere 1010.0 10 < th dose independent rect. 5 1
23 217.85 radiation 20.0 10 < th dose independent rect. 5 1
27 217.91 precipitation 0.1 10 < th dose independent rect. 5 1
28 217.91 precipitation 0.1 10 < th dose dependent rect. 5 1
29 218.18 temperature 10.0 10 > th dose dependent rect. 5 1
32 218.31 atmosphere 1015.0 90 < th dose dependent rect. 4 3
33 218.32 wind 9.0 10 < th dose independent rect. 6 23
34 218.53 wind 9.0 10 < th dose dependent rect. 5 1
35 218.60 temperature 10.0 30 > th dose dependent rect. 22 14
36 218.71 temperature 20.0 30 > th dose independent rect. 9 3
37 218.72 precipitation 0.1 1440 < th dose independent rect. 10 3
38 218.72 precipitation 0.1 1440 < th dose dependent rect. 10 3
40 218.75 humidity 50.0 10 > th dose dependent rect. 5 1
41 218.79 radiation 1.0 90 < th dose dependent rect. 7 21
42 218.81 temperature 30.0 90 < th dose independent rect. 17 11
43 218.83 wind 7.0 30 < th dose independent rect. 9 3
44 218.83 radiation 1.0 10 < th dose dependent sin 12 NA
47 218.94 radiation 40.0 10 < th dose dependent rect. 5 1
50 219.02 wind 7.0 30 < th dose independent rect. 12 21
53 219.11 radiation 1.0 90 < th dose dependent rect. 11 17
56 219.14 humidity 70.0 90 > th dose independent rect. 17 11
61 219.27 radiation 1.0 10 > th dose independent rect. 5 1
73 219.32 radiation 1.0 90 < th dose dependent rect. 17 11
75 219.33 atmosphere 995.0 10 > th dose independent rect. 6 23
77 219.41 radiation 1.0 90 < th dose independent rect. 17 11
103 219.73 temperature 25.0 90 < th dose independent rect. 4 3
106 219.82 wind 1.0 30 > th dose independent rect. 9 3
108 219.83 temperature 10.0 1440 > th dose independent rect. 10 3
111 219.83 atmosphere 995.0 1440 > th dose independent rect. 10 3
112 219.83 temperature 10.0 1440 > th dose independent rect. 13 21
115 219.85 precipitation 0.1 10 < th dose independent rect. 6 23
118 219.85 precipitation 0.1 10 < th dose dependent rect. 6 23
120 219.90 humidity 90.0 30 < th dose independent rect. 9 3
124 219.94 temperature 15.0 30 > th dose dependent rect. 6 6
129 219.99 precipitation 0.1 30 < th dose independent rect. 12 21
131 219.99 precipitation 0.1 30 < th dose dependent rect. 12 21
132 220.07 temperature 10.0 30 > th dose independent rect. 9 3
134 220.07 atmosphere 995.0 30 > th dose independent rect. 9 3
135 220.07 atmosphere 1015.0 30 < th dose independent rect. 9 3
136 220.07 precipitation 0.1 30 < th dose independent rect. 9 3
137 220.07 temperature 10.0 30 > th dose independent rect. 12 21
138 220.07 precipitation 0.1 30 < th dose dependent rect. 9 3
139 220.08 radiation 1.0 30 > th dose independent rect. 9 3
143 220.10 humidity 90.0 90 > th dose dependent rect. 4 19
144 220.12 wind 5.0 90 < th dose independent rect. 19 9
150 220.22 radiation 1.0 10 < th dose independent sin 12 NA
160 220.39 radiation 20.0 10 < th dose independent rect. 5 4
161 220.45 radiation 1.0 10 > th dose independent sin 11 NA
166 220.53 wind 9.0 90 < th dose dependent rect. 19 9
171 220.65 radiation 1.0 90 < th dose independent rect. 7 21
182 220.68 radiation 40.0 10 < th dose dependent rect. 5 4
198 220.76 temperature 15.0 270 > th dose independent rect. 6 20
202 220.81 radiation 1.0 90 < th dose independent rect. 11 17
204 220.85 radiation 30.0 1440 < th dose independent rect. 5 2
210 220.89 wind 9.0 90 < th dose dependent rect. 6 22
213 221.01 radiation 40.0 90 < th dose dependent rect. 4 5
215 221.03 atmosphere 1015.0 30 < th dose dependent rect. 12 21
216 221.04 humidity 50.0 10 > th dose dependent rect. 5 4
227 221.21 humidity 70.0 90 > th dose independent rect. 4 5
228 221.25 precipitation 0.1 270 < th dose independent rect. 3 3
229 221.25 precipitation 0.1 270 < th dose dependent rect. 3 3
231 221.27 temperature 15.0 90 > th dose independent rect. 19 9
233 221.30 atmosphere 1015.0 270 < th dose dependent rect. 2 4
263 221.48 wind 9.0 10 < th dose dependent rect. 6 23
268 221.52 humidity 50.0 90 > th dose dependent rect. 4 5
274 221.62 humidity 70.0 1440 > th dose independent rect. 5 2
275 221.62 wind 9.0 10 < th dose dependent rect. 19 10
281 221.67 atmosphere 1000.0 10 > th dose independent rect. 19 10
294 221.82 temperature 15.0 90 > th dose independent rect. 8 20
295 221.84 radiation 20.0 90 < th dose independent rect. 4 4
298 221.89 precipitation 0.1 90 < th dose independent rect. 4 15
299 221.89 precipitation 0.1 90 < th dose dependent rect. 4 15
306 221.94 atmosphere 1015.0 30 < th dose independent rect. 12 21
308 221.97 humidity 50.0 90 > th dose dependent rect. 17 11
310 221.99 wind 9.0 90 < th dose independent rect. 19 9
311 222.02 humidity 70.0 10 > th dose independent rect. 5 4
314 222.03 humidity 50.0 90 > th dose independent rect. 19 9
317 222.03 radiation 1.0 90 < th dose independent rect. 19 9
322 222.03 humidity 70.0 10 > th dose independent rect. 19 10
323 222.03 temperature 10.0 90 > th dose independent rect. 4 15
324 222.03 atmosphere 1015.0 90 < th dose independent rect. 4 15
325 222.03 radiation 1.0 90 < th dose dependent rect. 19 9
333 222.09 wind 9.0 10 < th dose dependent rect. 5 4
336 222.11 wind 9.0 90 < th dose dependent rect. 8 20
347 222.19 radiation 10.0 270 < th dose independent rect. 2 4
349 222.21 atmosphere 1015.0 10 < th dose dependent rect. 5 4
350 222.22 radiation 20.0 270 < th dose independent rect. 16 10
356 222.26 wind 9.0 270 < th dose independent rect. 2 4
357 222.26 temperature 10.0 270 > th dose independent rect. 2 4
359 222.26 temperature 30.0 270 < th dose independent rect. 2 4
360 222.26 humidity 50.0 270 > th dose independent rect. 2 4
363 222.26 atmosphere 995.0 270 > th dose independent rect. 2 4
388 222.33 precipitation 0.1 270 < th dose independent rect. 6 20
390 222.33 precipitation 0.1 270 < th dose dependent rect. 6 20
395 222.39 temperature 15.0 10 > th dose independent rect. 9 20
398 222.41 wind 9.0 90 < th dose independent rect. 4 15
399 222.41 atmosphere 995.0 270 > th dose independent rect. 6 20
420 222.57 atmosphere 1010.0 10 < th dose independent rect. 5 4
423 222.59 precipitation 0.1 10 < th dose independent rect. 5 4
424 222.59 atmosphere 1000.0 270 > th dose independent rect. 16 10
426 222.59 radiation 40.0 270 < th dose dependent rect. 2 4
427 222.59 precipitation 0.1 10 < th dose dependent rect. 5 4
429 222.59 radiation 40.0 270 < th dose dependent rect. 15 11
431 222.61 atmosphere 1010.0 90 < th dose independent rect. 4 5
446 222.67 atmosphere 995.0 30 > th dose independent rect. 12 21
458 222.72 temperature 20.0 270 > th dose independent rect. 6 6
462 222.75 wind 7.0 10 < th dose independent rect. 5 4
464 222.75 temperature 10.0 10 > th dose independent rect. 5 4
466 222.75 temperature 30.0 10 < th dose independent rect. 5 4
467 222.75 humidity 50.0 10 > th dose independent rect. 5 4
469 222.75 atmosphere 995.0 10 > th dose independent rect. 5 4
476 222.78 wind 9.0 270 < th dose independent rect. 12 18
484 222.80 atmosphere 995.0 90 > th dose dependent rect. 19 9
489 222.82 temperature 10.0 1440 > th dose independent rect. 5 5
492 222.82 temperature 30.0 90 < th dose independent rect. 4 5
493 222.82 atmosphere 995.0 1440 > th dose independent rect. 5 5
494 222.82 atmosphere 1015.0 1440 < th dose independent rect. 5 5
496 222.82 wind 7.0 270 < th dose independent rect. 6 6
497 222.82 temperature 10.0 1440 > th dose independent rect. 10 19
500 222.82 wind 9.0 270 < th dose independent rect. 6 20
501 222.82 wind 9.0 90 < th dose independent rect. 8 20
550 223.01 temperature 30.0 90 < th dose dependent rect. 4 5
559 223.03 precipitation 0.1 90 < th dose independent rect. 19 9
560 223.03 precipitation 0.1 90 < th dose dependent rect. 19 9
563 223.06 wind 9.0 10 < th dose independent rect. 9 20
571 223.11 temperature 10.0 1440 > th dose independent rect. 20 9
574 223.11 temperature 30.0 1440 < th dose independent rect. 20 9
578 223.11 humidity 50.0 1440 > th dose independent rect. 20 9
584 223.11 atmosphere 995.0 1440 > th dose independent rect. 20 9
585 223.11 radiation 20.0 1440 < th dose independent rect. 20 9
597 223.11 temperature 10.0 1440 > th dose independent rect. 5 15
602 223.13 precipitation 0.1 270 < th dose independent rect. 6 6
606 223.13 precipitation 0.1 270 < th dose dependent rect. 6 6
613 223.16 temperature 15.0 270 > th dose independent rect. 12 18
617 223.18 atmosphere 995.0 270 > th dose independent rect. 6 6
618 223.18 atmosphere 1015.0 270 < th dose independent rect. 6 6
621 223.18 temperature 10.0 30 > th dose dependent rect. 12 21
639 223.30 wind 7.0 1440 < th dose independent rect. 5 2
641 223.30 temperature 10.0 1440 > th dose independent rect. 5 2
644 223.30 temperature 30.0 1440 < th dose independent rect. 5 2
648 223.30 humidity 50.0 1440 > th dose independent rect. 5 2
653 223.30 atmosphere 995.0 1440 > th dose independent rect. 5 2
654 223.30 atmosphere 1015.0 1440 < th dose independent rect. 5 2
659 223.30 humidity 50.0 14400 > th dose independent rect. 5 4
661 223.30 temperature 10.0 1440 > th dose independent rect. 7 22
672 223.32 atmosphere 995.0 10 > th dose dependent rect. 5 1
673 223.33 temperature 30.0 90 < th dose dependent rect. 4 3
686 223.41 radiation 1.0 270 > th dose independent rect. 6 6
706 223.49 atmosphere 995.0 10 > th dose independent rect. 9 20
707 223.51 radiation 1.0 10 > th dose dependent rect. 18 12
713 223.52 temperature 10.0 30 > th dose dependent rect. 12 10
717 223.54 temperature 30.0 10 < th dose dependent rect. 5 1
757 223.68 wind 9.0 270 < th dose dependent rect. 6 6
758 223.68 temperature 10.0 90 > th dose dependent rect. 19 9
767 223.75 radiation 1.0 10 > th dose dependent rect. 5 1
784 223.76 atmosphere 995.0 90 > th dose independent rect. 8 20
789 223.78 temperature 30.0 10 < th dose independent rect. 9 20
812 223.83 atmosphere 1015.0 30 < th dose dependent rect. 9 3
814 223.83 humidity 90.0 90 > th dose dependent rect. 4 21
817 223.87 radiation 1.0 10 > th dose independent rect. 5 4
831 223.91 temperature 15.0 270 > th dose independent rect. 16 10
838 223.95 wind 5.0 10 < th dose independent rect. 19 10
841 224.00 precipitation 0.1 270 < th dose independent rect. 2 14
842 224.00 precipitation 0.1 270 < th dose dependent rect. 2 14
864 224.10 temperature 30.0 10 < th dose dependent rect. 5 4
865 224.10 wind 9.0 10 < th dose dependent rect. 9 20
902 224.28 wind 7.0 90 < th dose independent rect. 23 13
903 224.28 precipitation 0.1 270 < th dose independent rect. 12 18
904 224.28 atmosphere 1015.0 10 < th dose independent rect. 6 23
906 224.28 precipitation 0.1 270 < th dose dependent rect. 12 18
912 224.30 temperature 15.0 30 > th dose dependent rect. 20 16
915 224.34 humidity 90.0 90 > th dose independent rect. 4 12
918 224.36 temperature 15.0 90 > th dose independent rect. 23 13
934 224.45 precipitation 0.1 10 < th dose independent rect. 9 20
935 224.45 atmosphere 995.0 10 > th dose dependent rect. 19 10
936 224.45 precipitation 0.1 10 < th dose dependent rect. 9 20
942 224.51 precipitation 0.1 270 < th dose independent rect. 16 10
944 224.51 precipitation 0.1 270 < th dose dependent rect. 16 10
962 224.64 humidity 50.0 10 > th dose dependent rect. 19 10
971 224.68 temperature 30.0 10 < th dose independent rect. 6 23
975 224.70 wind 9.0 270 < th dose independent rect. 2 14
978 224.71 wind 9.0 90 < th dose dependent rect. 9 3
983 224.72 temperature 10.0 270 > th dose independent rect. 2 14
984 224.72 atmosphere 1015.0 270 < th dose independent rect. 2 14