Os03g0391000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase C54 family protein.
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Os03g0391000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase C54 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.47 | 0.191 | 10.6 | -0.799 | 0.337 | -0.323 | 0.632 | -0.591 | -0.0453 | 9.48 | 69 | 5810 | -- | -- |
| 16.98 | 0.192 | 10.6 | -0.777 | 0.337 | -0.36 | 0.617 | -- | -0.033 | 9.51 | 69.71 | 5791 | -- | -- |
| 17.93 | 0.197 | 10.6 | -0.775 | 0.331 | -0.331 | -- | -0.584 | -0.0433 | 9.52 | 69.09 | 5760 | -- | -- |
| 18.39 | 0.2 | 10.6 | -0.747 | 0.341 | -0.367 | -- | -- | -0.0539 | 9.51 | 69 | 5810 | -- | -- |
| 22.68 | 0.222 | 10.6 | -0.757 | -- | -0.397 | -- | -0.63 | -0.0494 | -- | 69.21 | 3763 | -- | -- |
| 18.93 | 0.204 | 10.6 | -0.756 | 0.337 | -- | 0.649 | -- | -0.0769 | 9.55 | -- | -- | -- | -- |
| 20.49 | 0.212 | 10.6 | -0.731 | 0.334 | -- | -- | -- | -0.0758 | 9.63 | -- | -- | -- | -- |
| 21.77 | 0.217 | 10.6 | -0.672 | -- | -0.437 | -- | -- | -0.0279 | -- | 70.1 | 2260 | -- | -- |
| 31.69 | 0.262 | 10.6 | -- | 0.324 | -0.305 | -- | -- | 0.00461 | 9.17 | 68 | 2819 | -- | -- |
| 27.08 | 0.243 | 10.7 | -0.734 | -- | -- | -- | -- | -0.0751 | -- | -- | -- | -- | -- |
| 34.59 | 0.275 | 10.6 | -- | 0.335 | -- | -- | -- | 0.00569 | 9.79 | -- | -- | -- | -- |
| 33.63 | 0.27 | 10.6 | -- | -- | -0.502 | -- | -- | 0.0295 | -- | 69.74 | 2260 | -- | -- |
| 41.3 | 0.3 | 10.6 | -- | -- | -- | -- | -- | 0.00633 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.32 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 11 | 2 |
| 2 | 16.33 | humidity | 70.0 | 4320 | > th | dose independent | sin | 10 | NA |
| 3 | 16.33 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 18 | 17 |
| 10 | 16.37 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 11 | 16.39 | humidity | 70.0 | 4320 | < th | dose independent | sin | 10 | NA |
| 12 | 16.39 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 13 | 16.39 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 10 | 3 |
| 16 | 16.39 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 18 | 20 |
| 24 | 16.40 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 25 | 16.40 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 3 | 8 |
| 28 | 16.41 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 16 | 19 |
| 31 | 16.42 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 19 | 16 |
| 68 | 16.45 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 69 | 16.45 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 101 | 16.46 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 18 | 20 |
| 105 | 16.47 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 6 |
| 125 | 16.47 | humidity | 60.0 | 4320 | > th | dose dependent | rect. | 8 | 2 |
| 142 | 16.48 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 9 |
| 153 | 16.48 | humidity | 60.0 | 4320 | > th | dose dependent | rect. | 6 | 5 |
| 158 | 16.48 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 9 |
| 169 | 16.49 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 9 |
| 183 | 16.49 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 7 |
| 229 | 16.50 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 5 |
| 236 | 16.50 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 9 |
| 250 | 16.51 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 252 | 16.51 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 7 |
| 253 | 16.51 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 15 |
| 254 | 16.51 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 15 |
| 267 | 16.51 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 7 |
| 270 | 16.51 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 15 |
| 274 | 16.52 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 279 | 16.52 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 289 | 16.52 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 4 |
| 395 | 16.55 | humidity | 70.0 | 4320 | < th | dose dependent | sin | 5 | NA |
| 436 | 16.56 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 7 |
| 443 | 16.57 | humidity | 60.0 | 4320 | > th | dose independent | sin | 5 | NA |
| 450 | 16.57 | humidity | 70.0 | 4320 | < th | dose dependent | sin | 2 | NA |
| 497 | 16.59 | humidity | 60.0 | 4320 | < th | dose independent | sin | 4 | NA |
| 525 | 16.60 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 567 | 16.61 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 18 |
| 568 | 16.61 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 18 |
| 575 | 16.61 | humidity | 70.0 | 4320 | < th | dose dependent | no | NA | NA |
| 590 | 16.61 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 9 | 10 |
| 630 | 16.61 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 18 |
| 905 | 16.64 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 11 |
| 928 | 16.64 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 12 | 23 |
| 935 | 16.65 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 941 | 16.65 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 7 | 7 |
| 1000 | 16.66 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 2 | NA |