Os03g0390700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transthyretin-like protein.
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Os03g0390700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transthyretin-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15 | 0.182 | 13 | 0.249 | 0.193 | -0.374 | 0.293 | -0.699 | 0.126 | 3.13 | 17.67 | 141 | -- | -- |
| 15.49 | 0.183 | 13 | 0.246 | 0.203 | -0.31 | 0.53 | -- | 0.125 | 2.81 | 17.08 | 158 | -- | -- |
| 15.18 | 0.181 | 13 | 0.248 | 0.177 | -0.364 | -- | -0.841 | 0.123 | 2.95 | 14.67 | 156 | -- | -- |
| 16.43 | 0.189 | 13 | 0.236 | 0.198 | -0.296 | -- | -- | 0.122 | 2.82 | 14.15 | 162 | -- | -- |
| 15.94 | 0.186 | 13 | 0.254 | -- | -0.408 | -- | -0.695 | 0.128 | -- | -1.162e-05 | 180 | -- | -- |
| 17 | 0.193 | 13 | 0.248 | 0.325 | -- | 0.481 | -- | 0.109 | 2.35 | -- | -- | -- | -- |
| 17.85 | 0.198 | 13 | 0.234 | 0.326 | -- | -- | -- | 0.107 | 2.3 | -- | -- | -- | -- |
| 17.1 | 0.193 | 13 | 0.247 | -- | -0.431 | -- | -- | 0.132 | -- | -0.2478 | 180 | -- | -- |
| 17.88 | 0.197 | 13 | -- | 0.224 | -0.301 | -- | -- | 0.0944 | 2.7 | 21.68 | 161 | -- | -- |
| 24.15 | 0.23 | 13 | 0.248 | -- | -- | -- | -- | 0.114 | -- | -- | -- | -- | -- |
| 19.29 | 0.205 | 13 | -- | 0.33 | -- | -- | -- | 0.0804 | 2.31 | -- | -- | -- | -- |
| 18.71 | 0.201 | 13 | -- | -- | -0.431 | -- | -- | 0.105 | -- | -1.607 | 178 | -- | -- |
| 25.77 | 0.237 | 13 | -- | -- | -- | -- | -- | 0.0869 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.47 | radiation | 20 | 270 | < th | dose independent | rect. | 2 | 9 |
| 2 | 14.47 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 10 |
| 21 | 14.75 | radiation | 20 | 270 | > th | dose dependent | sin | 8 | NA |
| 30 | 14.79 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 4 | 17 |
| 45 | 14.87 | radiation | 20 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 61 | 14.88 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 82 | 14.89 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 9 |
| 89 | 14.90 | temperature | 25 | 270 | > th | dose dependent | rect. | 22 | 15 |
| 95 | 14.92 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 126 | 14.95 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 8 | 9 |
| 127 | 14.96 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 8 |
| 128 | 14.97 | radiation | 30 | 270 | > th | dose independent | sin | 8 | NA |
| 131 | 14.98 | radiation | 20 | 270 | < th | dose independent | sin | 7 | NA |
| 140 | 14.99 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 146 | 15.00 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 5 | 17 |
| 147 | 15.00 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 148 | 15.00 | radiation | 40 | 270 | < th | dose dependent | sin | 5 | NA |
| 211 | 15.03 | radiation | 30 | 90 | < th | dose independent | rect. | 4 | 17 |
| 241 | 15.04 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 4 | 15 |
| 302 | 15.07 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 4 | 17 |
| 308 | 15.08 | temperature | 25 | 90 | > th | dose dependent | sin | 5 | NA |
| 371 | 15.11 | radiation | 30 | 270 | > th | dose independent | rect. | 7 | 6 |
| 410 | 15.12 | radiation | 30 | 270 | > th | dose independent | rect. | 8 | 3 |
| 460 | 15.13 | radiation | 20 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 501 | 15.16 | radiation | 40 | 10 | < th | dose independent | rect. | 5 | 17 |
| 524 | 15.17 | radiation | 30 | 90 | < th | dose independent | rect. | 3 | 22 |
| 606 | 15.20 | radiation | 40 | 270 | > th | dose independent | rect. | 9 | 1 |
| 632 | 15.20 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 9 |
| 689 | 15.22 | radiation | 30 | 10 | < th | dose independent | rect. | 4 | 8 |
| 690 | 15.22 | temperature | 30 | 90 | < th | dose independent | rect. | 4 | 11 |
| 696 | 15.22 | temperature | 15 | 270 | > th | dose independent | rect. | 1 | 22 |
| 697 | 15.22 | temperature | 15 | 270 | > th | dose independent | rect. | 5 | 23 |
| 789 | 15.24 | temperature | 15 | 270 | > th | dose independent | rect. | 17 | 14 |
| 817 | 15.25 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 7 |
| 820 | 15.25 | temperature | 30 | 90 | < th | dose independent | rect. | 4 | 9 |
| 835 | 15.25 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 22 |
| 857 | 15.26 | radiation | 1 | 90 | > th | dose independent | rect. | 18 | 13 |
| 873 | 15.26 | humidity | 60 | 90 | > th | dose dependent | rect. | 17 | 11 |
| 899 | 15.27 | radiation | 30 | 270 | < th | dose independent | rect. | 2 | 19 |
| 904 | 15.27 | radiation | 20 | 90 | > th | dose dependent | no | NA | NA |