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Os03g0390200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Serine/threonine-protein kinase SAPK1 (EC 2.7.1.37) (Osmotic stress/abscisic acid-activated protein kinase 1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.4 (0.0178) R2 : 0.6
β1 : -0.813 (0.0651) R2dD : 0.142 R2D : 0.0514
β2 : 0.969 (0.0464) R2dC : 0.384 R2C : 0.32
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.488 (0.038) R2dN8 : 0.194 R2N8 : 0.0817
σ : 0.334
deviance : 51.01
__
_____
C
peak time of C : 6.21
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
39.83 0.297 12.4 -0.863 0.917 -0.536 1.7 -0.344 -0.451 7.05 37.09 162 -- --
39.96 0.294 12.4 -0.866 0.924 -0.519 1.71 -- -0.451 7 37.04 170 -- --
47.28 0.32 12.4 -0.861 0.916 -0.484 -- -0.195 -0.463 6.83 37.09 169 -- --
47.31 0.32 12.4 -0.843 0.922 -0.485 -- -- -0.47 6.83 37.01 169 -- --
73.05 0.398 12.4 -0.709 -- -0.786 -- -0.204 -0.342 -- 40.69 677 -- --
44.66 0.313 12.4 -0.833 0.958 -- 1.63 -- -0.482 6.47 -- -- -- --
51.01 0.334 12.4 -0.813 0.969 -- -- -- -0.488 6.21 -- -- -- --
72.9 0.398 12.4 -0.681 -- -0.777 -- -- -0.34 -- 40.7 696 -- --
65.21 0.376 12.3 -- 0.926 -0.401 -- -- -0.375 6.78 35 188 -- --
99.7 0.467 12.4 -0.786 -- -- -- -- -0.467 -- -- -- -- --
68.42 0.387 12.4 -- 0.958 -- -- -- -0.398 6.26 -- -- -- --
85.55 0.431 12.4 -- -- -0.827 -- -- -0.251 -- 40 698 -- --
116 0.503 12.4 -- -- -- -- -- -0.38 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 37.66 temperature 10.0 270 > th dose dependent rect. 22 16
2 37.69 temperature 10.0 30 > th dose dependent rect. 9 8
6 37.83 temperature 10.0 270 > th dose dependent rect. 7 8
7 37.85 temperature 20.0 270 > th dose independent rect. 21 17
9 37.88 humidity 90.0 10 < th dose independent rect. 17 16
11 37.94 temperature 20.0 90 > th dose independent rect. 9 19
15 37.97 precipitation 0.1 30 < th dose independent rect. 17 16
16 37.97 precipitation 0.1 30 < th dose dependent rect. 17 16
18 38.04 humidity 90.0 270 < th dose independent rect. 7 8
20 38.05 precipitation 0.1 270 < th dose independent rect. 14 8
21 38.05 precipitation 0.1 270 < th dose dependent rect. 14 8
23 38.06 radiation 40.0 30 < th dose independent rect. 17 18
26 38.09 humidity 50.0 90 > th dose independent rect. 9 8
28 38.11 wind 9.0 270 < th dose independent rect. 22 16
30 38.13 humidity 50.0 270 > th dose independent rect. 22 16
35 38.20 wind 1.0 30 > th dose independent rect. 9 8
42 38.24 atmosphere 1015.0 270 < th dose independent rect. 22 16
46 38.25 atmosphere 1015.0 30 < th dose dependent rect. 9 8
47 38.26 temperature 20.0 10 > th dose independent rect. 22 19
48 38.27 temperature 10.0 270 > th dose independent rect. 14 8
51 38.27 atmosphere 995.0 270 > th dose independent rect. 22 16
52 38.28 radiation 1.0 90 > th dose independent rect. 17 15
54 38.31 wind 9.0 30 < th dose independent rect. 9 8
62 38.37 precipitation 0.1 270 < th dose independent rect. 15 17
67 38.37 precipitation 0.1 270 < th dose dependent rect. 15 17
68 38.38 wind 9.0 30 < th dose independent rect. 17 16
71 38.41 atmosphere 1010.0 30 < th dose independent rect. 9 8
75 38.42 temperature 10.0 30 > th dose independent rect. 9 8
78 38.42 temperature 10.0 30 > th dose independent rect. 17 16
79 38.43 precipitation 0.1 30 < th dose independent rect. 9 8
83 38.43 precipitation 0.1 30 < th dose dependent rect. 9 8
84 38.44 wind 9.0 270 < th dose independent rect. 14 8
85 38.44 atmosphere 995.0 30 > th dose independent rect. 9 8
91 38.46 wind 1.0 270 > th dose independent rect. 15 17
94 38.47 wind 1.0 270 > th dose independent rect. 14 8
111 38.51 temperature 20.0 30 > th dose independent rect. 20 21
115 38.53 wind 7.0 270 < th dose independent rect. 8 7
117 38.53 humidity 50.0 10 > th dose independent rect. 17 16
118 38.53 radiation 40.0 30 < th dose independent rect. 17 16
135 38.60 precipitation 0.1 270 < th dose independent rect. 22 16
138 38.60 precipitation 0.1 270 < th dose dependent rect. 22 16
166 38.68 atmosphere 1015.0 270 < th dose dependent rect. 14 7
175 38.71 radiation 40.0 270 < th dose independent rect. 2 9
182 38.75 radiation 40.0 270 < th dose independent rect. 14 8
183 38.75 wind 1.0 30 > th dose independent rect. 17 16
188 38.78 radiation 1.0 90 < th dose independent sin 11 NA
193 38.79 atmosphere 995.0 30 > th dose independent rect. 17 16
195 38.80 atmosphere 995.0 270 > th dose independent rect. 8 7
201 38.81 radiation 1.0 90 > th dose dependent rect. 17 14
226 38.84 temperature 10.0 30 > th dose dependent rect. 22 19
232 38.86 humidity 90.0 30 < th dose dependent rect. 17 16
242 38.88 temperature 10.0 270 > th dose independent rect. 15 17
263 38.91 precipitation 0.1 270 < th dose independent rect. 8 7
266 38.91 radiation 40.0 270 < th dose independent rect. 15 17
267 38.91 precipitation 0.1 270 < th dose dependent rect. 8 7
276 38.94 wind 7.0 270 < th dose independent rect. 15 17
279 38.94 temperature 10.0 30 > th dose dependent rect. 20 21
294 38.97 radiation 1.0 270 > th dose independent rect. 8 7
297 38.97 atmosphere 1000.0 270 > th dose dependent rect. 23 9
320 39.01 radiation 40.0 270 < th dose dependent rect. 3 8
330 39.03 atmosphere 1015.0 270 < th dose independent rect. 14 8
332 39.04 humidity 50.0 30 > th dose independent rect. 11 6
347 39.05 radiation 30.0 270 < th dose independent rect. 14 19
366 39.07 temperature 30.0 270 < th dose dependent rect. 3 9
380 39.09 temperature 10.0 90 > th dose dependent rect. 9 19
381 39.10 humidity 90.0 10 < th dose independent rect. 2 7
394 39.11 atmosphere 1000.0 270 > th dose dependent rect. 2 5
410 39.14 atmosphere 1010.0 30 < th dose independent rect. 11 6
412 39.14 radiation 20.0 270 < th dose independent rect. 3 7
417 39.14 radiation 1.0 90 < th dose dependent sin 10 NA
418 39.14 temperature 10.0 30 > th dose dependent rect. 11 6
463 39.19 humidity 50.0 270 > th dose independent rect. 7 20
465 39.20 radiation 1.0 90 > th dose independent sin 11 NA
485 39.22 radiation 1.0 30 > th dose independent rect. 9 8
495 39.23 wind 3.0 30 > th dose independent rect. 1 16
518 39.25 atmosphere 995.0 10 > th dose dependent rect. 17 18
536 39.27 atmosphere 1000.0 270 > th dose dependent rect. 1 7
542 39.28 temperature 25.0 270 < th dose independent rect. 3 9
573 39.30 humidity 50.0 30 > th dose independent rect. 24 17
582 39.31 atmosphere 995.0 270 > th dose independent rect. 14 8
594 39.32 radiation 40.0 270 < th dose independent rect. 13 22
597 39.32 temperature 10.0 10 > th dose dependent rect. 24 17
604 39.34 wind 9.0 30 < th dose independent rect. 11 6
707 39.42 wind 1.0 30 > th dose independent rect. 11 6
709 39.42 temperature 10.0 1440 > th dose independent rect. 10 8
713 39.42 temperature 10.0 1440 > th dose independent rect. 18 16
725 39.43 atmosphere 1015.0 30 < th dose independent rect. 17 16
741 39.45 wind 5.0 10 < th dose independent rect. 16 19
756 39.47 atmosphere 1015.0 10 < th dose dependent rect. 17 5
760 39.48 humidity 90.0 30 < th dose independent rect. 11 6
774 39.48 atmosphere 1010.0 10 < th dose independent rect. 22 19
776 39.48 radiation 1.0 270 > th dose dependent rect. 8 6
779 39.48 atmosphere 1015.0 10 < th dose dependent rect. 24 17
781 39.49 wind 5.0 270 < th dose independent rect. 3 4
782 39.49 atmosphere 995.0 30 > th dose independent rect. 11 6
791 39.50 temperature 10.0 30 > th dose independent rect. 11 6
809 39.51 radiation 1.0 90 > th dose independent rect. 4 4
812 39.51 precipitation 0.1 30 < th dose independent rect. 11 6
829 39.51 precipitation 0.1 30 < th dose dependent rect. 11 6
894 39.57 precipitation 0.1 270 < th dose independent rect. 13 22
901 39.57 precipitation 0.1 270 < th dose dependent rect. 13 22
917 39.58 wind 9.0 90 < th dose dependent rect. 16 17
919 39.59 wind 1.0 30 > th dose independent rect. 17 7
931 39.59 atmosphere 1010.0 10 < th dose independent rect. 24 17
940 39.59 radiation 40.0 270 < th dose dependent rect. 15 18
944 39.60 humidity 50.0 10 > th dose independent rect. 17 18
992 39.63 temperature 10.0 30 > th dose dependent rect. 17 16
997 39.64 wind 9.0 10 < th dose independent rect. 24 17