Os03g0387500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os03g0387500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 96.16 | 0.461 | 6.92 | -1.64 | 0.518 | 0.428 | -3.5 | 1.37 | 0.193 | 15 | 20.8 | 14 | -- | -- |
| 103.92 | 0.478 | 6.95 | -1.94 | 0.57 | 0.366 | -2.66 | -- | 0.131 | 15.4 | 20.8 | 14 | -- | -- |
| 124.27 | 0.523 | 6.96 | -1.98 | 0.602 | 0.375 | -- | 0.0895 | 0.12 | 16.6 | 20.8 | 14 | -- | -- |
| 123 | 0.517 | 6.96 | -1.99 | 0.577 | 0.385 | -- | -- | 0.112 | 16.4 | 21.5 | 10 | -- | -- |
| 140.11 | 0.554 | 6.97 | -2.1 | -- | 0.513 | -- | -0.0581 | 0.0465 | -- | 21.5 | 17 | -- | -- |
| 110.23 | 0.492 | 6.93 | -1.86 | 0.657 | -- | -2.6 | -- | 0.208 | 15.3 | -- | -- | -- | -- |
| 130.63 | 0.535 | 6.94 | -1.91 | 0.672 | -- | -- | -- | 0.193 | 16.1 | -- | -- | -- | -- |
| 140.13 | 0.554 | 6.97 | -2.09 | -- | 0.514 | -- | -- | 0.0497 | -- | 21.5 | 17 | -- | -- |
| 225.87 | 0.7 | 6.9 | -- | 0.685 | 0.109 | -- | -- | 0.384 | 16.2 | 21.28 | 11 | -- | -- |
| 155.17 | 0.582 | 6.94 | -1.93 | -- | -- | -- | -- | 0.175 | -- | -- | -- | -- | -- |
| 226.48 | 0.704 | 6.9 | -- | 0.709 | -- | -- | -- | 0.406 | 16.1 | -- | -- | -- | -- |
| 250.16 | 0.739 | 6.9 | -- | -- | 0.256 | -- | -- | 0.34 | -- | 21.2 | 4 | -- | -- |
| 253.86 | 0.744 | 6.89 | -- | -- | -- | -- | -- | 0.39 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.62 | temperature | 20.0 | 720 | < th | dose independent | rect. | 4 | 3 |
| 7 | 91.95 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 4 | 3 |
| 8 | 92.04 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 4 | 5 |
| 9 | 92.29 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 10 | 92.33 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 2 | 8 |
| 21 | 92.80 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 4 |
| 86 | 94.50 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 129 | 95.22 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 135 | 95.32 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 136 | 95.32 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 163 | 95.66 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 171 | 95.76 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 3 | 1 |
| 184 | 95.91 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 213 | 96.28 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 24 | 15 |
| 218 | 96.32 | temperature | 20.0 | 720 | > th | dose dependent | sin | 6 | NA |
| 225 | 96.37 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 227 | 96.37 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 5 | 3 |
| 246 | 96.48 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 12 |
| 248 | 96.48 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 250 | 96.48 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 12 |
| 257 | 96.55 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 14 |
| 258 | 96.55 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 14 |
| 266 | 96.59 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 24 | 17 |
| 268 | 96.59 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 24 | 17 |
| 296 | 96.73 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 24 | 17 |
| 302 | 96.75 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 14 |
| 309 | 96.77 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 12 |
| 322 | 96.83 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 3 |
| 323 | 96.84 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 5 | 3 |
| 327 | 96.85 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 329 | 96.85 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 357 | 96.99 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 24 | 8 |
| 363 | 97.02 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 367 | 97.07 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 2 |
| 373 | 97.09 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 389 | 97.18 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 393 | 97.18 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 397 | 97.18 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 24 | 8 |
| 417 | 97.25 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 24 | 8 |
| 428 | 97.28 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 443 | 97.33 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 6 |
| 444 | 97.33 | temperature | 30.0 | 720 | < th | dose dependent | sin | 6 | NA |
| 463 | 97.38 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 479 | 97.44 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 4 | NA |
| 481 | 97.44 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 4 | NA |
| 503 | 97.49 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 7 |
| 506 | 97.51 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 6 | NA |
| 511 | 97.53 | radiation | 40.0 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 531 | 97.55 | temperature | 15.0 | 30 | > th | dose dependent | sin | 11 | NA |
| 560 | 97.62 | temperature | 20.0 | 10 | > th | dose independent | rect. | 18 | 9 |
| 576 | 97.66 | temperature | 20.0 | 10 | > th | dose independent | sin | 11 | NA |
| 579 | 97.67 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 4 | NA |
| 581 | 97.68 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 583 | 97.68 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 8 |
| 587 | 97.70 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 591 | 97.70 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 4 |
| 612 | 97.77 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 626 | 97.79 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 23 |
| 641 | 97.83 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 7 | 5 |
| 646 | 97.84 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 7 | 5 |
| 654 | 97.86 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 14 |
| 683 | 97.92 | temperature | 20.0 | 720 | > th | dose independent | sin | 6 | NA |
| 692 | 97.94 | temperature | 20.0 | 270 | > th | dose dependent | sin | 3 | NA |
| 746 | 98.06 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 9 |
| 771 | 98.12 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 885 | 98.37 | temperature | 20.0 | 90 | > th | dose independent | rect. | 5 | 22 |
| 934 | 98.48 | wind | 1.0 | 1440 | < th | dose independent | rect. | 12 | 7 |
| 953 | 98.52 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 6 |
| 972 | 98.56 | temperature | 20.0 | 10 | > th | dose independent | rect. | 6 | 21 |
| 982 | 98.59 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 13 | 17 |
| 988 | 98.61 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 1 |