Os03g0387300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : VQ domain containing protein.
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Os03g0387300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : VQ domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 145.98 | 0.568 | 6.42 | 4.24 | 1.1 | -1.83 | -0.295 | 2.78 | 1.05 | 3.99 | 25 | 5575 | -- | -- |
| 146.73 | 0.564 | 6.43 | 3.82 | 1.09 | -1.78 | -0.0141 | -- | 1.27 | 3.88 | 23.2 | 9332 | -- | -- |
| 146.23 | 0.563 | 6.42 | 4.24 | 1.1 | -1.83 | -- | 2.75 | 1.05 | 3.97 | 25 | 5572 | -- | -- |
| 146.23 | 0.563 | 6.44 | 3.74 | 1.06 | -1.78 | -- | -- | 1.25 | 4.09 | 23.1 | 9294 | -- | -- |
| 200.03 | 0.659 | 6.44 | 4.32 | -- | -1.78 | -- | 2.8 | 0.995 | -- | 26.8 | 6165 | -- | -- |
| 242.16 | 0.73 | 6.62 | 2.65 | 1.01 | -- | -0.347 | -- | 0.453 | 4.34 | -- | -- | -- | -- |
| 242.49 | 0.729 | 6.61 | 2.66 | 1 | -- | -- | -- | 0.455 | 4.33 | -- | -- | -- | -- |
| 206.37 | 0.669 | 6.45 | 3.77 | -- | -1.73 | -- | -- | 1.23 | -- | 22.87 | 9098 | -- | -- |
| 399.82 | 0.931 | 6.62 | -- | 1.07 | -0.731 | -- | -- | 0.388 | 4.35 | 28.9 | 7394 | -- | -- |
| 296.66 | 0.805 | 6.62 | 2.7 | -- | -- | -- | -- | 0.482 | -- | -- | -- | -- | -- |
| 428.48 | 0.968 | 6.68 | -- | 1.05 | -- | -- | -- | 0.159 | 4.27 | -- | -- | -- | -- |
| 442.33 | 0.983 | 6.68 | -- | -- | -0.794 | -- | -- | 0.215 | -- | 28.7 | 6250 | -- | -- |
| 488.43 | 1.03 | 6.69 | -- | -- | -- | -- | -- | 0.183 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 136.25 | temperature | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 4 | 136.81 | temperature | 30 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 162 | 140.16 | temperature | 10 | 14400 | > th | dose dependent | sin | 19 | NA |
| 298 | 140.86 | temperature | 30 | 14400 | < th | dose dependent | sin | 18 | NA |
| 363 | 141.07 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 485 | 141.38 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 603 | 141.60 | temperature | 10 | 14400 | > th | dose dependent | no | NA | NA |
| 669 | 141.75 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 738 | 141.89 | temperature | 25 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 764 | 141.95 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 6 |
| 808 | 142.03 | temperature | 25 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 849 | 142.11 | temperature | 30 | 14400 | < th | dose dependent | no | NA | NA |
| 852 | 142.11 | temperature | 30 | 14400 | < th | dose dependent | rect. | 21 | 23 |
| 916 | 142.23 | temperature | 25 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 947 | 142.29 | temperature | 30 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 963 | 142.33 | temperature | 10 | 14400 | > th | dose dependent | rect. | 21 | 1 |