Os03g0386800 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0386800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase S10, serine carboxypeptidase family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.73	(0.0609)	R²	:	0.835
β₁	:	-11.2	(0.272)	R²_dD	:	0.988	R²_D	:	0.427
β₂	:	2.81	(0.161)	R²_dC	:	0.142	R²_C	:	0.0772
β₃	:	2.53	(0.291)	R²_dE	:	0.0378	R²_E	:	-0.135
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	15.5	(1.22)	R²_dD*E	:	0.0959	R²_D*E	:	-0.232
γ₁	:	-2.58	(0.128)	R²_dN8	:	0.198	R²_N8	:	0.0202
σ	:	1.11
deviance	:	572.64
__

_____

C
peak time of C	:	11.2
E
wheather	:	radiation
threshold	:	0.9564
memory length	:	1456
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	18
open length of G	:	11.1

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
567.22	1.12	5.71	-11.3	2.25	2.36	-3.73	15.1	-2.56	11.3	0.9329	1442	18.1	11
672.36	1.21	5.71	-8.99	2.63	2.26	-5.1	--	-2.23	11.6	1.11	1454	17.9	11.9
572.64	1.11	5.73	-11.2	2.81	2.53	--	15.5	-2.58	11.2	0.9564	1456	18	11.1
756.12	1.28	5.73	-9.08	2.88	2.37	--	--	-2.27	11.2	1.055	1463	17.9	11.7
881.95	1.39	5.92	-8.81	--	-1.4	--	3.55	-2.43	--	1.022	1440	18.1	10.9
775.86	1.31	5.87	-8.7	2.27	--	-4.28	--	-2.46	11.5	--	--	--	--
852.28	1.37	5.88	-8.88	2.3	--	--	--	-2.48	11.2	--	--	--	--
822.15	1.34	5.95	-8.79	--	-1.8	--	--	-2.56	--	123.6	6	16.6	13.4
1302.64	1.68	5.59	--	0.768	5.37	--	--	-1.01	13.7	5.481e-08	46987	18.9	13
1182.72	1.61	5.94	-8.94	--	--	--	--	-2.5	--	--	--	--	--
2931.5	2.53	5.66	--	2.39	--	--	--	-1.49	11.4	--	--	--	--
1179.82	1.6	5.32	--	--	7.09	--	--	0.226	--	0.001167	47107	20.2	12.2
3289.47	2.68	5.71	--	--	--	--	--	-1.51	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	571.64	radiation	1	1440	< th	dose dependent	rect.	18	11
4	573.95	radiation	1	1440	< th	dose dependent	rect.	18	1
9	575.25	radiation	1	1440	< th	dose dependent	rect.	18	4
12	588.89	radiation	1	43200	< th	dose dependent	rect.	2	3
13	589.09	radiation	1	43200	< th	dose dependent	rect.	4	1
17	591.08	radiation	1	43200	< th	dose dependent	rect.	21	8
24	593.96	radiation	1	14400	< th	dose independent	rect.	18	10
27	594.01	temperature	25	720	> th	dose dependent	rect.	21	14
28	594.04	radiation	1	14400	< th	dose independent	rect.	18	1
38	594.93	radiation	1	14400	< th	dose dependent	rect.	18	1
40	595.22	radiation	1	14400	< th	dose dependent	rect.	18	4
44	595.90	temperature	20	43200	< th	dose independent	rect.	21	1
45	596.11	temperature	20	43200	< th	dose dependent	rect.	21	1
47	596.47	temperature	20	43200	> th	dose independent	rect.	21	1
50	596.77	radiation	1	14400	> th	dose independent	rect.	18	1
71	597.12	temperature	25	720	> th	dose dependent	rect.	2	9
109	598.02	temperature	20	43200	< th	dose independent	rect.	14	8
122	598.43	temperature	20	43200	< th	dose independent	rect.	11	11
139	598.95	temperature	20	43200	> th	dose independent	rect.	10	12
142	599.05	temperature	20	43200	> th	dose independent	rect.	14	8
155	599.37	radiation	1	1440	< th	dose independent	rect.	18	10
184	599.81	radiation	20	4320	< th	dose dependent	rect.	17	10
189	599.87	radiation	1	1440	< th	dose independent	rect.	18	1
191	599.88	radiation	20	4320	< th	dose dependent	rect.	17	1
208	600.14	temperature	25	720	< th	dose independent	rect.	6	3
214	600.27	radiation	20	4320	< th	dose dependent	rect.	17	8
236	600.55	radiation	20	4320	< th	dose dependent	rect.	17	5
268	601.07	temperature	20	720	> th	dose dependent	sin	6	NA
275	601.25	temperature	20	43200	< th	dose independent	sin	19	NA
311	601.64	temperature	20	43200	> th	dose independent	sin	20	NA
324	601.78	radiation	1	1440	< th	dose independent	rect.	18	4
426	602.89	temperature	20	43200	< th	dose independent	rect.	1	1
492	603.92	radiation	10	4320	> th	dose independent	rect.	16	15
540	604.64	temperature	25	14400	> th	dose dependent	rect.	5	1
553	604.86	temperature	20	43200	> th	dose independent	rect.	1	1
599	605.68	temperature	20	43200	< th	dose dependent	sin	15	NA
656	606.21	radiation	1	4320	> th	dose dependent	rect.	17	1
855	607.59	temperature	20	43200	> th	dose independent	rect.	7	1
866	607.63	temperature	20	43200	< th	dose independent	rect.	7	1
941	607.88	temperature	20	43200	< th	dose independent	no	NA	NA
954	607.93	temperature	20	43200	< th	dose independent	rect.	1	23