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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0383600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Very-long-chain 3-ketoacyl-CoA synthase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0414) R2 : 0.212
β1 : 0.918 (0.148) R2dD : 0.0745 R2D : 0.00457
β2 : -- (--) R2dC : -- R2C : --
β3 : 13.3 (1.3) R2dE : 2.28 R2E : -1.91
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 25.9 (2.77) R2dD*E : 1.91 R2D*E : -1.95
γ1 : 0.126 (0.084) R2dN8 : 0.00523 R2N8 : -0.0303
σ : 0.732
deviance : 244.01
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 23.1
memory length : 2
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 9.12
open length of G : 8.14

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
246.87 0.738 2.95 0.85 0.118 9.97 -0.288 18.8 0.14 23.2 23.45 3 9.97 8.01
275.77 0.773 2.81 1.16 0.0568 2.29 -0.226 -- 0.32 8.5 26.64 1388 11.8 2.5
243.39 0.732 2.98 0.897 0.126 11.9 -- 23 0.13 22.5 23.27 2 9.39 7.84
269.97 0.765 2.79 1.05 0.0559 1.68 -- -- 0.389 9.61 26.92 1293 2.82 11.6
244.01 0.732 2.99 0.918 -- 13.3 -- 25.9 0.126 -- 23.1 2 9.12 8.14
300.74 0.813 2.87 0.601 0.108 -- 0.432 -- 0.0598 15.3 -- -- -- --
301.28 0.813 2.87 0.609 0.117 -- -- -- 0.0626 16.3 -- -- -- --
268.98 0.764 2.79 1.05 -- 1.68 -- -- 0.363 -- 28 1277 2.86 13.2
295.94 0.801 2.89 -- 0.12 1.38 -- -- 0.16 7.39 31.81 1181 3.99 12.7
302.02 0.812 2.87 0.605 -- -- -- -- 0.0594 -- -- -- -- --
311.07 0.825 2.88 -- 0.106 -- -- -- -0.00533 16.4 -- -- -- --
294.25 0.799 2.85 -- -- 1.11 -- -- 0.126 -- 32.38 1251 3.14 13.6
311.67 0.824 2.88 -- -- -- -- -- -0.00766 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 260.09 temperature 25 10 < th dose dependent rect. 9 8
5 262.81 temperature 25 10 < th dose dependent sin 22 NA
11 264.98 temperature 20 4320 > th dose independent rect. 22 1
16 266.40 temperature 15 10 > th dose dependent rect. 17 23
17 266.46 humidity 90 1440 < th dose dependent rect. 4 1
18 267.13 temperature 30 10 < th dose dependent rect. 22 22
19 267.15 temperature 25 10 < th dose dependent rect. 9 11
20 267.20 atmosphere 1015 4320 > th dose dependent rect. 11 2
25 267.41 atmosphere 1015 4320 < th dose independent rect. 12 1
27 267.47 temperature 30 10 < th dose dependent rect. 12 23
32 267.56 atmosphere 1015 4320 > th dose independent rect. 12 1
56 267.96 temperature 30 90 < th dose dependent rect. 12 23
66 268.09 temperature 20 4320 < th dose independent rect. 22 1
80 268.23 temperature 30 10 < th dose dependent rect. 19 23
123 268.66 humidity 50 1440 > th dose dependent rect. 4 1
124 268.70 temperature 30 10 < th dose dependent rect. 9 23
131 268.79 temperature 30 10 < th dose dependent rect. 3 23
143 268.97 temperature 15 10 > th dose dependent rect. 24 23
145 269.02 temperature 30 720 < th dose dependent rect. 4 20
158 269.14 temperature 15 90 > th dose dependent rect. 24 23
171 269.38 temperature 20 4320 < th dose independent rect. 21 4
173 269.40 temperature 20 1440 < th dose independent rect. 5 1
174 269.40 temperature 25 1440 < th dose dependent rect. 9 18
193 269.55 temperature 20 1440 > th dose independent rect. 5 1
195 269.57 atmosphere 1015 4320 < th dose independent rect. 19 1
197 269.58 temperature 10 720 > th dose dependent rect. 24 22
200 269.63 temperature 20 4320 < th dose independent rect. 20 6
203 269.64 temperature 30 10 < th dose dependent no NA NA
216 269.72 temperature 30 10 < th dose dependent rect. 15 23
224 269.79 temperature 30 1440 < th dose dependent rect. 22 18
231 269.82 temperature 30 1440 < th dose dependent rect. 24 16
233 269.83 temperature 25 1440 < th dose dependent rect. 6 21
243 269.88 temperature 25 1440 < th dose dependent rect. 24 20
252 269.91 temperature 25 4320 < th dose dependent rect. 1 1
256 269.91 temperature 25 1440 < th dose dependent rect. 22 22
283 269.99 temperature 25 1440 < th dose dependent rect. 18 23
315 270.08 temperature 10 4320 > th dose dependent rect. 1 1
323 270.09 temperature 25 1440 < th dose dependent sin 2 NA
330 270.10 temperature 10 10 > th dose dependent no NA NA
343 270.12 temperature 10 1440 > th dose dependent rect. 22 17
361 270.16 temperature 25 1440 < th dose dependent no NA NA
421 270.24 temperature 25 1440 < th dose dependent rect. 15 23
428 270.25 temperature 25 1440 < th dose dependent rect. 13 23
478 270.32 temperature 25 10 < th dose dependent rect. 5 19
503 270.36 temperature 25 1440 < th dose dependent sin 18 NA
531 270.38 temperature 10 720 > th dose dependent rect. 14 22
584 270.45 temperature 30 10 < th dose dependent rect. 23 19
620 270.51 temperature 20 10 > th dose dependent rect. 13 23
629 270.53 temperature 20 4320 > th dose independent rect. 18 8
642 270.55 temperature 20 1440 > th dose dependent rect. 2 5
650 270.57 temperature 20 1440 > th dose dependent rect. 5 1
665 270.59 humidity 90 720 < th dose independent rect. 4 1
680 270.62 temperature 10 1440 > th dose dependent rect. 11 2
690 270.63 humidity 50 4320 > th dose independent rect. 12 5
719 270.66 temperature 10 1440 > th dose dependent rect. 9 22
731 270.68 temperature 10 1440 > th dose dependent sin 5 NA
784 270.75 wind 5 43200 > th dose independent rect. 19 6
812 270.78 temperature 20 4320 < th dose independent rect. 13 13
858 270.83 temperature 25 1440 < th dose dependent rect. 11 1
916 270.88 temperature 10 1440 > th dose dependent no NA NA
941 270.90 temperature 25 4320 < th dose dependent rect. 21 9
952 270.90 temperature 10 1440 > th dose dependent rect. 5 23