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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0383200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Very-long-chain 3-ketoacyl-CoA synthase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.06 (0.0219) R2 : 0.00974
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0977 (0.0461) R2dN8 : 0.0126 R2N8 : 0.00974
σ : 0.413
deviance : 78.16
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
71.73 0.398 3.08 -0.00716 0.115 -0.371 -0.0516 1.83 0.0861 5.27 1.024 16 -- --
74.45 0.402 3.06 0.0661 0.134 -0.237 -0.254 -- 0.105 4.86 1.083 15 -- --
71.73 0.394 3.08 -0.00781 0.115 -0.372 -- 1.84 0.0861 5.34 1.041 16 -- --
74.6 0.402 3.06 0.0675 0.136 -0.235 -- -- 0.106 5.39 1.057 15 -- --
72.32 0.396 3.08 -0.015 -- -0.439 -- 1.92 0.0884 -- 1.04 16 -- --
75.69 0.408 3.06 0.0943 0.199 -- -0.219 -- 0.103 4.86 -- -- -- --
75.81 0.408 3.06 0.0952 0.199 -- -- -- 0.104 5.04 -- -- -- --
75.42 0.404 3.06 0.0628 -- -0.308 -- -- 0.11 -- 1.038 15 -- --
74.72 0.403 3.06 -- 0.134 -0.244 -- -- 0.0993 5.38 1.072 15 -- --
77.88 0.412 3.06 0.102 -- -- -- -- 0.109 -- -- -- -- --
76.05 0.408 3.06 -- 0.2 -- -- -- 0.0934 5.03 -- -- -- --
75.52 0.405 3.06 -- -- -0.315 -- -- 0.103 -- 1.037 15 -- --
78.16 0.413 3.06 -- -- -- -- -- 0.0977 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 57.42 temperature 20.0 30 > th dose dependent rect. 2 1
2 57.52 temperature 20.0 30 > th dose independent rect. 2 1
3 57.54 atmosphere 1005.0 30 > th dose dependent rect. 2 1
6 57.60 atmosphere 1005.0 30 > th dose independent rect. 2 1
10 57.73 wind 5.0 30 < th dose dependent rect. 2 1
11 57.74 wind 3.0 30 < th dose independent rect. 2 1
17 57.84 humidity 80.0 30 > th dose independent rect. 2 1
19 57.85 temperature 10.0 30 > th dose independent rect. 2 1
21 57.85 temperature 30.0 30 < th dose independent rect. 2 1
22 57.85 humidity 50.0 30 > th dose independent rect. 2 1
26 57.85 atmosphere 1010.0 30 < th dose independent rect. 2 1
28 57.85 radiation 1.0 30 < th dose independent rect. 2 1
33 57.85 precipitation 0.1 30 < th dose independent rect. 2 1
34 57.85 temperature 10.0 30 > th dose independent rect. 3 23
35 57.85 radiation 1.0 30 < th dose dependent rect. 2 1
40 57.85 precipitation 0.1 30 < th dose dependent rect. 2 1
41 57.86 humidity 50.0 30 > th dose dependent rect. 2 1
48 58.48 atmosphere 1015.0 30 < th dose dependent rect. 2 1
50 58.80 temperature 30.0 30 < th dose dependent rect. 2 1
52 59.19 wind 1.0 30 > th dose independent rect. 2 1
99 61.18 radiation 10.0 43200 < th dose dependent rect. 3 1
108 61.28 wind 9.0 1440 < th dose independent rect. 3 1
109 61.28 temperature 10.0 1440 > th dose independent rect. 3 1
112 61.28 temperature 30.0 1440 < th dose independent rect. 3 1
116 61.28 humidity 50.0 1440 > th dose independent rect. 3 1
125 61.28 atmosphere 995.0 1440 > th dose independent rect. 3 1
126 61.28 radiation 1.0 1440 < th dose independent rect. 3 1
146 61.28 temperature 10.0 1440 > th dose independent rect. 4 23
159 61.94 wind 9.0 30 < th dose independent rect. 3 23
163 62.70 temperature 25.0 90 > th dose dependent rect. 1 3
167 63.45 atmosphere 995.0 30 > th dose independent rect. 3 23
168 63.74 temperature 25.0 90 > th dose independent rect. 1 3
178 64.74 precipitation 0.1 30 < th dose independent rect. 3 23
179 64.74 precipitation 0.1 30 < th dose dependent rect. 3 23
205 67.42 humidity 50.0 30 > th dose independent rect. 3 23
256 68.91 temperature 30.0 30 < th dose independent rect. 3 23
270 69.42 humidity 90.0 90 < th dose independent rect. 2 1
274 69.44 wind 3.0 30 < th dose dependent rect. 2 3
285 69.69 temperature 10.0 720 > th dose independent rect. 15 8
286 69.69 temperature 10.0 720 > th dose independent rect. 23 16
289 69.72 atmosphere 995.0 720 > th dose independent rect. 15 8
294 69.82 atmosphere 995.0 720 > th dose independent rect. 23 16
296 69.85 humidity 50.0 720 > th dose independent rect. 3 8
298 69.87 temperature 10.0 720 > th dose independent rect. 3 8
300 69.87 atmosphere 995.0 720 > th dose independent rect. 3 8
301 69.87 temperature 10.0 720 > th dose independent rect. 11 16
302 69.90 precipitation 0.1 720 < th dose independent rect. 15 8
305 69.90 precipitation 0.1 720 < th dose dependent rect. 15 8
312 70.04 wind 9.0 720 < th dose independent rect. 3 8
327 70.27 wind 1.0 30 < th dose independent rect. 24 3
333 70.40 wind 1.0 10 > th dose independent rect. 23 23
341 70.50 precipitation 0.1 720 < th dose independent rect. 11 16
342 70.50 precipitation 0.1 720 < th dose dependent rect. 11 16
353 70.68 temperature 25.0 1440 < th dose independent rect. 1 1
380 70.99 humidity 90.0 90 < th dose independent rect. 1 4
390 71.07 radiation 40.0 720 < th dose independent rect. 15 8
392 71.11 precipitation 0.1 720 < th dose independent rect. 3 8
395 71.11 precipitation 0.1 720 < th dose dependent rect. 3 8
399 71.16 atmosphere 1015.0 30 < th dose independent rect. 3 23
409 71.28 atmosphere 1015.0 720 < th dose independent rect. 3 8
414 71.30 wind 1.0 30 > th dose independent rect. 3 23
424 71.42 precipitation 0.1 720 < th dose independent rect. 23 16
425 71.42 precipitation 0.1 720 < th dose dependent rect. 23 16
448 71.56 wind 1.0 10 < th dose independent rect. 13 14
500 71.70 wind 3.0 30 < th dose dependent rect. 2 6
505 71.74 wind 1.0 720 > th dose independent rect. 15 8
518 71.80 wind 1.0 10 > th dose independent rect. 23 12
558 71.93 temperature 25.0 720 < th dose independent rect. 21 5
580 72.00 wind 1.0 10 < th dose independent rect. 5 22
596 72.06 wind 9.0 720 < th dose independent rect. 15 8
605 72.09 wind 1.0 10 > th dose independent sin 8 NA
621 72.15 atmosphere 1000.0 10 > th dose independent rect. 16 10
629 72.17 wind 9.0 720 < th dose dependent rect. 2 1
646 72.20 wind 9.0 720 < th dose independent rect. 23 16
647 72.20 wind 1.0 10 > th dose independent rect. 5 23
654 72.21 radiation 30.0 10 < th dose dependent rect. 16 10
655 72.22 wind 1.0 10 > th dose independent sin 14 NA
664 72.23 radiation 10.0 10 < th dose independent rect. 16 10
670 72.24 wind 9.0 1440 < th dose independent rect. 3 3
672 72.24 temperature 10.0 1440 > th dose independent rect. 3 3
675 72.24 temperature 30.0 1440 < th dose independent rect. 3 3
679 72.24 humidity 50.0 1440 > th dose independent rect. 3 3
688 72.24 atmosphere 995.0 1440 > th dose independent rect. 3 3
689 72.24 radiation 20.0 1440 < th dose independent rect. 3 3
703 72.24 temperature 10.0 1440 > th dose independent rect. 6 21
722 72.29 wind 9.0 10 < th dose independent rect. 16 10
752 72.32 precipitation 0.1 10 < th dose independent rect. 2 14
754 72.32 precipitation 0.1 10 < th dose dependent rect. 2 14
812 72.37 radiation 30.0 10 < th dose independent rect. 16 10
816 72.37 atmosphere 995.0 30 > th dose dependent rect. 3 23
818 72.38 temperature 10.0 10 > th dose independent rect. 16 10
819 72.38 humidity 50.0 10 > th dose independent rect. 16 10
821 72.38 temperature 10.0 10 > th dose independent rect. 2 14
823 72.38 atmosphere 1015.0 10 < th dose independent rect. 2 14
832 72.39 precipitation 0.1 10 < th dose independent rect. 16 10
838 72.39 precipitation 0.1 10 < th dose dependent rect. 16 10
852 72.42 radiation 40.0 10 < th dose dependent rect. 14 12
861 72.45 temperature 25.0 270 < th dose independent rect. 20 12
862 72.45 atmosphere 1000.0 10 > th dose independent rect. 14 12
863 72.45 atmosphere 995.0 10 > th dose independent rect. 2 14
868 72.47 radiation 40.0 30 < th dose independent rect. 14 12
885 72.50 radiation 1.0 10 < th dose dependent rect. 2 12
892 72.51 radiation 10.0 10 < th dose independent rect. 14 12
909 72.53 temperature 10.0 1440 > th dose independent rect. 17 10
912 72.53 radiation 30.0 1440 < th dose independent rect. 17 10
919 72.53 temperature 10.0 1440 > th dose independent rect. 3 14
932 72.55 humidity 50.0 30 > th dose independent rect. 2 14
938 72.56 wind 9.0 10 < th dose independent rect. 2 14
944 72.57 radiation 1.0 30 < th dose independent rect. 2 12
957 72.59 atmosphere 995.0 720 > th dose independent rect. 15 16
961 72.59 radiation 1.0 10 < th dose dependent rect. 2 6
976 72.61 humidity 60.0 10 > th dose independent rect. 14 12
986 72.62 wind 9.0 10 < th dose independent rect. 14 12
991 72.63 wind 1.0 10 > th dose independent no NA NA
992 72.63 temperature 25.0 270 > th dose independent sin 11 NA
998 72.63 precipitation 0.1 10 < th dose independent rect. 2 12