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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0382100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Very-long-chain 3-ketoacyl-CoA synthase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.92 (0.0776) R2 : 0.672
β1 : -5.36 (0.275) R2dD : 0.365 R2D : 0.392
β2 : 1.67 (0.162) R2dC : 0.0772 R2C : 0.069
β3 : -1.16 (0.428) R2dE : 0.0137 R2E : 0.117
β4 : -2.34 (0.645) R2dD*C : 0.00945 R2D*C : 0.00072
β5 : 8.21 (1.57) R2dD*E : 0.0527 R2D*E : 0.144
γ1 : -1.2 (0.148) R2dN8 : 0.0701 R2N8 : 0.0251
σ : 1.25
deviance : 703.8
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_____
C
peak time of C : 2.16
E
wheather : wind
threshold : 6.995
memory length : 4316
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17.2
open length of G : 1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
703.8 1.25 4.92 -5.36 1.67 -1.16 -2.34 8.21 -1.2 2.16 6.995 4316 17.2 1
796.86 1.31 4.97 -5.67 1.57 -1.28 -1.8 -- -1.2 1.43 6.932 4319 17.3 2.62
721.38 1.25 4.92 -5.23 1.64 -1.29 -- 7.89 -1.12 2.29 6.996 4316 17.2 1
809.86 1.33 4.96 -5.48 1.51 -1.35 -- -- -1.2 2.19 7 4319 17.3 2.63
874.29 1.38 4.92 -5.19 -- -1.38 -- 8.47 -1.05 -- 6.99 4320 17.3 0.933
885.47 1.4 5.2 -6.25 1.74 -- -2.87 -- -1.68 2.11 -- -- -- --
916.37 1.42 5.19 -6.17 1.74 -- -- -- -1.66 2.25 -- -- -- --
933.05 1.42 4.92 -4.76 -- -3.01 -- -- -0.918 -- 6.563 4330 17.3 2.37
839.27 1.35 4.77 -- 1.47 -5.95 -- -- 0.136 1.61 6.9 47520 17 1
1097.37 1.55 5.18 -6.1 -- -- -- -- -1.62 -- -- -- -- --
1919.44 2.05 5.04 -- 1.63 -- -- -- -0.976 2.17 -- -- -- --
1016.54 1.48 4.77 -- -- -5.96 -- -- 0.179 -- 6.894 47520 17 0.994
2077.55 2.13 5.02 -- -- -- -- -- -0.944 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 708.33 wind 9 43200 < th dose independent rect. 14 4
2 708.67 wind 9 43200 > th dose independent rect. 14 4
4 713.07 wind 7 4320 < th dose independent rect. 17 1
5 713.50 wind 9 43200 < th dose independent rect. 11 8
7 714.00 wind 9 43200 < th dose independent rect. 12 6
9 714.17 wind 9 43200 > th dose independent rect. 11 9
10 714.40 wind 9 43200 > th dose independent rect. 11 11
12 714.65 wind 7 4320 > th dose independent rect. 17 1
18 715.01 wind 9 43200 < th dose independent rect. 11 11
25 716.54 wind 9 43200 > th dose dependent rect. 14 5
33 718.14 wind 9 43200 > th dose dependent rect. 11 9
35 718.65 wind 7 43200 > th dose dependent rect. 15 2
36 718.90 wind 9 43200 > th dose independent rect. 14 8
40 719.55 wind 9 43200 > th dose dependent rect. 11 11
46 720.19 wind 7 43200 > th dose dependent rect. 12 6
54 721.36 wind 5 4320 > th dose dependent rect. 17 1
55 721.40 radiation 40 43200 < th dose dependent rect. 23 6
57 721.67 wind 9 43200 > th dose dependent rect. 14 8
65 722.82 wind 1 43200 < th dose independent rect. 18 11
67 722.92 radiation 40 43200 < th dose dependent rect. 21 8
74 723.40 radiation 40 43200 < th dose dependent rect. 19 10
97 724.88 wind 9 43200 < th dose independent rect. 14 8
102 725.58 radiation 10 43200 < th dose dependent rect. 3 2
112 726.18 wind 7 43200 > th dose dependent rect. 12 1
130 728.08 wind 1 43200 < th dose independent rect. 20 9
133 728.26 wind 5 4320 > th dose dependent rect. 17 4
161 731.28 wind 1 43200 > th dose independent rect. 18 11
164 731.58 wind 7 43200 > th dose independent rect. 12 1
167 732.00 radiation 1 43200 < th dose independent rect. 24 5
168 732.01 wind 7 4320 > th dose independent rect. 17 4
175 732.54 radiation 1 43200 < th dose independent rect. 19 10
176 732.59 radiation 1 43200 < th dose independent rect. 21 8
188 733.63 radiation 1 43200 < th dose independent rect. 3 2
192 733.80 wind 1 43200 < th dose independent rect. 22 6
202 734.40 radiation 10 4320 < th dose dependent rect. 24 5
221 735.04 wind 7 4320 > th dose independent rect. 15 6
222 735.08 radiation 10 4320 < th dose dependent rect. 19 10
230 735.31 radiation 1 43200 > th dose independent rect. 4 1
240 735.31 radiation 1 43200 > th dose dependent rect. 4 1
263 736.08 wind 1 43200 > th dose independent rect. 3 1
273 737.09 wind 1 43200 > th dose independent rect. 20 9
274 737.10 temperature 20 43200 > th dose independent rect. 4 1
276 737.17 temperature 20 43200 < th dose independent rect. 4 1
278 737.25 wind 5 4320 > th dose dependent rect. 14 9
284 737.60 wind 7 43200 < th dose independent rect. 12 2
335 739.89 radiation 1 43200 > th dose dependent rect. 18 1
357 740.30 radiation 10 43200 < th dose independent rect. 18 8
363 740.51 temperature 25 43200 > th dose independent rect. 19 1
364 740.54 radiation 10 43200 < th dose independent rect. 18 4
366 740.55 radiation 10 43200 < th dose independent rect. 18 2
373 740.67 temperature 25 43200 < th dose independent rect. 19 1
375 740.68 wind 1 43200 < th dose dependent rect. 18 12
376 740.69 temperature 20 43200 < th dose independent rect. 7 1
378 740.77 wind 9 1440 < th dose dependent rect. 17 1
392 741.22 temperature 30 43200 < th dose independent rect. 13 2
402 741.51 temperature 20 43200 > th dose dependent rect. 4 1
408 741.58 wind 1 43200 < th dose dependent rect. 17 14
409 741.59 radiation 1 14400 < th dose independent rect. 9 1
424 741.79 temperature 30 43200 > th dose independent rect. 13 2
427 741.82 temperature 20 43200 > th dose independent rect. 7 1
432 741.84 radiation 20 14400 > th dose dependent rect. 16 1
493 742.76 radiation 1 14400 > th dose independent rect. 9 1
497 742.77 radiation 10 43200 < th dose dependent rect. 18 12
586 743.78 temperature 30 43200 < th dose independent rect. 13 10
589 743.78 temperature 30 43200 < th dose independent rect. 13 19
604 743.81 radiation 10 4320 < th dose dependent rect. 3 2
684 744.24 wind 1 43200 < th dose dependent rect. 22 7
701 744.34 wind 1 43200 > th dose independent rect. 22 7
794 744.71 temperature 25 43200 > th dose dependent rect. 18 1
796 744.73 temperature 20 43200 > th dose independent rect. 24 1
804 744.77 temperature 30 43200 > th dose independent rect. 16 1
814 744.83 temperature 30 43200 < th dose independent rect. 16 1
859 744.95 temperature 30 43200 < th dose independent sin 17 NA
888 745.13 wind 1 43200 < th dose independent rect. 3 1
904 745.20 temperature 30 43200 < th dose independent rect. 4 13
910 745.21 temperature 25 43200 > th dose independent rect. 18 15
914 745.22 temperature 30 43200 < th dose independent rect. 22 19
915 745.22 temperature 30 43200 < th dose independent rect. 20 21
924 745.26 temperature 25 43200 < th dose independent rect. 18 15
950 745.35 wind 7 4320 > th dose independent sin 17 NA
951 745.35 temperature 30 43200 > th dose independent sin 17 NA
954 745.37 wind 7 4320 < th dose independent sin 17 NA
990 745.47 wind 1 14400 < th dose dependent rect. 2 3