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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0381100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : tRNA pseudouridine synthase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.3 (0.05) R2 : 0.0939
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.67 (0.389) R2dE : 0.0941 R2E : 0.0939
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00553 (0.106) R2dN8 : 7.11e-06 R2N8 : -0.00013
σ : 0.938
deviance : 405.86
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 998.3
memory length : 3
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
388.48 0.926 3.59 -1.22 0.409 10.7 -0.539 -51.2 0.0785 17.1 1000 34 -- --
394.01 0.932 3.29 0.456 0.406 1.95 -0.566 -- 0.083 17.2 1000 34 -- --
389.2 0.919 3.59 -1.23 0.404 10.7 -- -51.3 0.0795 17.2 1000 34 -- --
391.97 0.928 3.29 0.498 0.389 2.51 -- -- 0.0655 17.3 998.3 3 -- --
397.82 0.929 3.59 -1.26 -- 10.7 -- -51.4 0.0654 -- 1000 34 -- --
428.04 0.97 3.3 0.625 0.419 -- -0.523 -- 0.0183 17.2 -- -- -- --
428.72 0.97 3.31 0.625 0.417 -- -- -- 0.0157 17.3 -- -- -- --
399.75 0.931 3.29 0.484 -- 2.56 -- -- 0.0552 -- 998.3 3 -- --
398.3 0.93 3.31 -- 0.381 2.6 -- -- 0.0139 17.4 998.4 3 -- --
437.79 0.978 3.3 0.61 -- -- -- -- 0.00535 -- -- -- -- --
439.01 0.98 3.32 -- 0.406 -- -- -- -0.0539 17.4 -- -- -- --
405.86 0.938 3.3 -- -- 2.67 -- -- 0.00553 -- 998.3 3 -- --
447.62 0.988 3.32 -- -- -- -- -- -0.0624 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 384.46 atmosphere 1000 90 < th dose dependent rect. 21 21
3 384.90 atmosphere 1000 10 < th dose dependent rect. 2 17
5 385.05 atmosphere 1000 90 < th dose dependent rect. 23 19
65 387.35 temperature 25 270 < th dose independent rect. 4 22
67 387.74 atmosphere 1000 90 < th dose dependent rect. 6 23
69 387.86 atmosphere 1000 10 < th dose dependent rect. 2 22
76 388.10 atmosphere 1000 90 < th dose dependent rect. 2 23
108 388.67 atmosphere 1000 90 < th dose dependent rect. 23 23
115 388.74 atmosphere 1000 10 < th dose dependent rect. 23 23
119 388.79 atmosphere 1000 30 < th dose dependent no NA NA
120 388.79 atmosphere 1000 30 < th dose dependent rect. 13 23
121 388.81 atmosphere 1000 30 < th dose dependent rect. 11 23
122 388.81 atmosphere 1000 30 < th dose dependent rect. 15 23
131 388.89 atmosphere 1000 30 < th dose dependent rect. 9 23
140 388.98 atmosphere 1000 30 < th dose dependent rect. 17 23
147 389.06 atmosphere 1000 1440 > th dose independent rect. 6 1
159 389.26 atmosphere 1000 1440 < th dose independent rect. 2 10
179 389.46 atmosphere 1000 1440 > th dose independent rect. 24 12
186 389.51 atmosphere 1000 1440 > th dose independent rect. 2 10
195 389.61 atmosphere 1000 270 < th dose dependent sin 2 NA
199 389.63 atmosphere 1000 1440 < th dose independent rect. 6 6
200 389.63 atmosphere 1000 1440 > th dose independent rect. 5 7
206 389.66 temperature 25 270 > th dose independent rect. 24 22
221 389.85 atmosphere 1000 10 < th dose independent rect. 2 20
227 389.91 atmosphere 1000 1440 < th dose independent rect. 7 1
243 389.97 atmosphere 1000 30 < th dose independent rect. 2 17
310 390.37 temperature 25 270 < th dose independent rect. 19 22
315 390.41 atmosphere 1000 1440 < th dose independent rect. 11 1
357 390.79 atmosphere 1000 90 < th dose dependent rect. 6 12
365 390.86 atmosphere 1000 1440 < th dose independent rect. 9 3
376 390.97 atmosphere 1000 10 < th dose dependent rect. 6 13
419 391.19 atmosphere 1000 1440 > th dose independent rect. 9 3
433 391.24 atmosphere 1000 1440 < th dose dependent rect. 2 10
436 391.26 atmosphere 1000 1440 < th dose dependent rect. 6 1
449 391.35 atmosphere 1000 1440 < th dose dependent rect. 6 6
476 391.50 atmosphere 1000 1440 < th dose dependent rect. 6 3
484 391.55 atmosphere 1000 1440 > th dose independent rect. 11 1
521 391.74 temperature 25 270 < th dose independent rect. 15 23
528 391.77 atmosphere 1010 270 < th dose dependent rect. 23 22
534 391.80 atmosphere 1000 1440 < th dose independent rect. 3 1
539 391.81 atmosphere 1000 1440 > th dose independent rect. 2 2
580 391.99 atmosphere 1000 720 < th dose dependent sin 5 NA
591 392.04 temperature 25 270 > th dose independent rect. 9 23
602 392.10 temperature 25 270 < th dose independent no NA NA
629 392.26 atmosphere 1000 10 < th dose independent rect. 24 22
640 392.29 atmosphere 1000 30 < th dose independent sin 0 NA
661 392.35 temperature 25 270 > th dose independent rect. 13 23
716 392.60 atmosphere 995 270 > th dose dependent rect. 4 22
739 392.71 temperature 25 270 > th dose independent no NA NA
752 392.76 atmosphere 1000 1440 < th dose dependent rect. 9 2
769 392.85 temperature 25 270 < th dose independent rect. 11 23
785 392.93 atmosphere 1000 1440 < th dose dependent rect. 3 1
787 392.93 temperature 30 270 < th dose dependent rect. 4 22
854 393.24 atmosphere 1000 90 > th dose independent sin 0 NA
856 393.24 temperature 20 270 > th dose dependent rect. 7 15
873 393.30 temperature 10 720 > th dose dependent rect. 7 7
878 393.32 temperature 25 270 > th dose independent rect. 5 23
905 393.41 temperature 15 270 > th dose dependent rect. 8 13
918 393.46 atmosphere 1000 1440 < th dose dependent rect. 11 1
974 393.63 temperature 25 270 > th dose dependent rect. 16 22