Os03g0379400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0379400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.91 | 0.301 | 8.01 | 0.618 | 0.169 | 0.0624 | -0.0027 | 2.27 | -0.254 | 10.3 | 11.36 | 4570 | -- | -- |
| 44.37 | 0.313 | 8.09 | 0.0693 | 0.164 | 0.382 | -0.134 | -- | -0.389 | 8.67 | 29.6 | 3354 | -- | -- |
| 40.91 | 0.298 | 8.01 | 0.618 | 0.169 | 0.0623 | -- | 2.27 | -0.254 | 10.3 | 11.37 | 4571 | -- | -- |
| 43.59 | 0.307 | 8.09 | 0.043 | 0.248 | 0.339 | -- | -- | -0.393 | 8.52 | 28.17 | 489 | -- | -- |
| 42.65 | 0.304 | 8.01 | 0.614 | -- | 0.0524 | -- | 2.25 | -0.254 | -- | 11.16 | 4532 | -- | -- |
| 45.66 | 0.317 | 8.1 | 0.0882 | 0.166 | -- | 0.011 | -- | -0.402 | 10.2 | -- | -- | -- | -- |
| 45.66 | 0.316 | 8.1 | 0.0886 | 0.166 | -- | -- | -- | -0.402 | 10.2 | -- | -- | -- | -- |
| 45.94 | 0.317 | 8.1 | 0.0659 | -- | 0.371 | -- | -- | -0.388 | -- | 29.6 | 3390 | -- | -- |
| 43.64 | 0.308 | 8.09 | -- | 0.248 | 0.346 | -- | -- | -0.398 | 8.51 | 28.2 | 489 | -- | -- |
| 47.33 | 0.321 | 8.1 | 0.0862 | -- | -- | -- | -- | -0.402 | -- | -- | -- | -- | -- |
| 45.86 | 0.317 | 8.1 | -- | 0.165 | -- | -- | -- | -0.412 | 10.2 | -- | -- | -- | -- |
| 46.06 | 0.317 | 8.1 | -- | -- | 0.38 | -- | -- | -0.395 | -- | 29.6 | 3390 | -- | -- |
| 47.52 | 0.322 | 8.1 | -- | -- | -- | -- | -- | -0.412 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.80 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 21 | 7 |
| 2 | 39.82 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 5 |
| 6 | 39.87 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 7 |
| 7 | 39.87 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 6 | 22 |
| 8 | 39.92 | temperature | 20 | 270 | < th | dose independent | rect. | 15 | 17 |
| 9 | 39.92 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 29 | 40.06 | temperature | 20 | 720 | < th | dose independent | sin | 16 | NA |
| 30 | 40.06 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 5 | 17 |
| 57 | 40.24 | temperature | 10 | 90 | > th | dose dependent | rect. | 21 | 7 |
| 91 | 40.41 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 9 |
| 95 | 40.42 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 105 | 40.45 | temperature | 20 | 270 | > th | dose independent | rect. | 7 | 20 |
| 106 | 40.47 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 116 | 40.49 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 14 |
| 123 | 40.53 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 12 |
| 126 | 40.54 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 136 | 40.56 | humidity | 50 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 137 | 40.56 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 17 |
| 144 | 40.57 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 21 |
| 153 | 40.60 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 12 |
| 165 | 40.61 | temperature | 20 | 90 | > th | dose independent | rect. | 22 | 15 |
| 166 | 40.61 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 19 |
| 180 | 40.64 | temperature | 20 | 720 | > th | dose independent | sin | 18 | NA |
| 182 | 40.64 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 7 | 10 |
| 192 | 40.65 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 16 | 7 |
| 199 | 40.67 | radiation | 20 | 4320 | < th | dose independent | rect. | 23 | 7 |
| 227 | 40.70 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 231 | 40.71 | temperature | 20 | 90 | > th | dose independent | rect. | 10 | 18 |
| 232 | 40.71 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 21 |
| 240 | 40.72 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 242 | 40.72 | temperature | 15 | 4320 | > th | dose dependent | rect. | 12 | 14 |
| 245 | 40.72 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 18 |
| 246 | 40.73 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 254 | 40.73 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 311 | 40.76 | temperature | 15 | 4320 | > th | dose dependent | sin | 17 | NA |
| 317 | 40.76 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 13 |
| 328 | 40.77 | temperature | 25 | 720 | < th | dose dependent | rect. | 14 | 11 |
| 348 | 40.78 | temperature | 15 | 4320 | > th | dose dependent | rect. | 13 | 9 |
| 351 | 40.78 | temperature | 30 | 4320 | < th | dose dependent | rect. | 15 | 10 |
| 396 | 40.80 | temperature | 30 | 4320 | < th | dose dependent | rect. | 16 | 6 |
| 397 | 40.80 | temperature | 15 | 4320 | > th | dose dependent | rect. | 15 | 7 |
| 407 | 40.81 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 436 | 40.82 | temperature | 25 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 448 | 40.82 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 10 | 18 |
| 453 | 40.82 | temperature | 25 | 720 | < th | dose dependent | sin | 16 | NA |
| 479 | 40.83 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 512 | 40.84 | temperature | 20 | 270 | < th | dose independent | sin | 11 | NA |
| 513 | 40.84 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 553 | 40.85 | temperature | 30 | 4320 | < th | dose dependent | sin | 16 | NA |
| 614 | 40.87 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 634 | 40.88 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 638 | 40.88 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 21 | 16 |
| 644 | 40.88 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 685 | 40.89 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 686 | 40.89 | humidity | 80 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 715 | 40.90 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 743 | 40.90 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 758 | 40.91 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 10 |
| 806 | 40.92 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 2 |
| 819 | 40.92 | wind | 5 | 10 | < th | dose independent | rect. | 13 | 21 |
| 898 | 40.94 | temperature | 15 | 4320 | > th | dose independent | rect. | 11 | 3 |
| 908 | 40.94 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 951 | 40.95 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 17 | 1 |