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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0378500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.97 (0.0472) R2 : 0.567
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.39 (0.116) R2dC : 0.407 R2C : 0.372
β3 : -1.73 (0.14) R2dE : 0.166 R2E : 0.0597
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.961 (0.105) R2dN8 : 0.119 R2N8 : -0.00479
σ : 0.87
deviance : 348.57
__
_____
C
peak time of C : 8.91
E
wheather : atmosphere
threshold : 1009
memory length : 47520
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
333.02 0.857 4.83 1.87 2.38 -1.26 0.938 -2.14 -0.459 8.9 1007 13596 -- --
342.87 0.862 4.92 1.26 2.39 -1.12 1.04 -- -0.683 8.85 1008 14652 -- --
335.99 0.854 4.83 1.91 2.38 -1.24 -- -2.14 -0.459 8.89 1007 13569 -- --
338.49 0.857 4.91 1.01 2.39 -1.26 -- -- -0.622 8.89 1010 26426 -- --
656.67 1.19 4.89 1.82 -- -1.28 -- -1.88 -0.388 -- 1006 11377 -- --
389.72 0.925 4.83 1.61 2.38 -- 0.899 -- -0.304 8.86 -- -- -- --
392.46 0.928 4.83 1.64 2.38 -- -- -- -0.304 8.86 -- -- -- --
660.78 1.2 4.98 0.808 -- -1.34 -- -- -0.678 -- 1009 27211 -- --
348.57 0.87 4.97 -- 2.39 -1.73 -- -- -0.961 8.91 1009 47520 -- --
715 1.25 4.89 1.65 -- -- -- -- -0.287 -- -- -- -- --
463.77 1.01 4.87 -- 2.38 -- -- -- -0.487 8.8 -- -- -- --
674.04 1.21 5.04 -- -- -1.7 -- -- -0.935 -- 1009 47520 -- --
786.45 1.31 4.93 -- -- -- -- -- -0.469 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 328.80 humidity 70 43200 < th dose dependent rect. 8 1
2 329.26 humidity 60 43200 < th dose independent rect. 23 10
5 329.50 humidity 70 43200 < th dose dependent rect. 24 9
13 329.85 humidity 50 43200 > th dose independent rect. 16 22
17 329.94 humidity 50 43200 > th dose independent rect. 17 20
24 330.25 humidity 50 43200 < th dose dependent rect. 16 23
26 330.44 humidity 50 43200 > th dose independent rect. 10 1
27 330.44 humidity 50 43200 < th dose independent rect. 16 22
28 330.46 humidity 50 43200 < th dose dependent rect. 13 22
31 330.63 humidity 50 43200 < th dose independent rect. 17 20
33 330.67 humidity 50 43200 > th dose independent rect. 9 3
38 330.83 radiation 20 43200 < th dose dependent rect. 17 1
39 330.84 humidity 50 43200 > th dose independent sin 8 NA
45 330.86 radiation 40 43200 < th dose dependent rect. 16 10
48 330.88 radiation 40 43200 < th dose dependent rect. 16 4
49 330.88 radiation 40 43200 < th dose dependent rect. 16 8
71 330.93 humidity 60 43200 > th dose independent rect. 24 9
76 330.99 humidity 60 43200 > th dose independent rect. 8 1
80 331.02 radiation 10 43200 < th dose dependent rect. 16 13
97 331.11 humidity 50 43200 < th dose dependent sin 7 NA
105 331.11 humidity 50 43200 < th dose dependent rect. 9 22
112 331.13 humidity 50 43200 > th dose independent rect. 22 14
117 331.13 humidity 50 43200 < th dose dependent rect. 4 16
125 331.14 humidity 50 43200 > th dose independent rect. 19 17
139 331.15 humidity 50 43200 < th dose dependent no NA NA
172 331.16 humidity 50 43200 < th dose dependent rect. 6 23
181 331.17 humidity 50 43200 < th dose dependent rect. 9 11
185 331.18 atmosphere 1010 14400 > th dose independent rect. 7 1
198 331.18 humidity 50 43200 < th dose dependent rect. 13 18
223 331.19 humidity 50 43200 < th dose dependent rect. 19 23
236 331.21 humidity 50 43200 > th dose independent rect. 3 9
269 331.25 humidity 50 43200 > th dose independent rect. 1 11
270 331.25 radiation 1 43200 > th dose dependent rect. 16 3
284 331.26 humidity 50 43200 < th dose dependent rect. 13 7
313 331.30 humidity 50 43200 < th dose independent sin 8 NA
322 331.32 humidity 50 43200 < th dose dependent sin 18 NA
391 331.40 humidity 50 43200 < th dose independent rect. 10 2
403 331.42 humidity 60 43200 < th dose dependent rect. 19 17
419 331.48 humidity 50 43200 > th dose independent rect. 9 22
445 331.56 humidity 50 43200 > th dose independent rect. 9 15
446 331.56 humidity 50 43200 > th dose independent rect. 9 17
450 331.57 humidity 50 43200 > th dose independent rect. 9 12
474 331.63 humidity 50 43200 > th dose independent sin 2 NA
475 331.63 humidity 50 43200 > th dose independent rect. 9 9
476 331.63 humidity 50 43200 > th dose independent rect. 19 23
477 331.63 humidity 50 43200 > th dose independent rect. 22 23
480 331.64 humidity 50 43200 > th dose independent rect. 4 20
489 331.65 humidity 50 43200 > th dose independent no NA NA
490 331.65 humidity 50 43200 > th dose independent rect. 4 17
536 331.68 atmosphere 1010 43200 > th dose dependent rect. 21 1
718 331.93 atmosphere 1010 14400 < th dose independent rect. 7 1
733 331.95 atmosphere 1010 43200 > th dose dependent rect. 23 1
744 331.97 humidity 50 43200 < th dose independent rect. 9 22
773 332.02 humidity 50 43200 < th dose independent rect. 9 11
783 332.04 humidity 50 43200 < th dose independent rect. 13 23
820 332.09 humidity 50 43200 < th dose independent rect. 3 17
847 332.12 humidity 50 43200 < th dose independent no NA NA
876 332.13 humidity 60 43200 < th dose dependent rect. 11 1
977 332.30 atmosphere 1010 43200 < th dose independent rect. 18 1
992 332.32 humidity 50 43200 < th dose dependent rect. 14 1