Os03g0378000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleoside phosphatase GDA1/CD39 family protein.
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Os03g0378000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleoside phosphatase GDA1/CD39 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.9 | 0.351 | 7.8 | -0.205 | 0.581 | 1.3 | 0.527 | 0.476 | 0.184 | 2.91 | 21.72 | 1750 | -- | -- |
| 56.41 | 0.35 | 7.82 | -0.348 | 0.583 | 1.28 | 0.517 | -- | 0.148 | 2.96 | 21.72 | 1790 | -- | -- |
| 56.75 | 0.351 | 7.8 | -0.226 | 0.584 | 1.3 | -- | 0.439 | 0.175 | 3.12 | 21.73 | 1767 | -- | -- |
| 57.2 | 0.352 | 7.82 | -0.356 | 0.586 | 1.28 | -- | -- | 0.152 | 3.21 | 21.75 | 1791 | -- | -- |
| 73 | 0.398 | 7.8 | -0.0844 | -- | 1.25 | -- | 0.479 | 0.204 | -- | 22 | 1221 | -- | -- |
| 108.49 | 0.488 | 7.73 | 0.222 | 0.575 | -- | 0.428 | -- | 0.546 | 2.8 | -- | -- | -- | -- |
| 109.07 | 0.489 | 7.73 | 0.212 | 0.58 | -- | -- | -- | 0.544 | 3 | -- | -- | -- | -- |
| 73.44 | 0.399 | 7.82 | -0.18 | -- | 1.18 | -- | -- | 0.159 | -- | 22.3 | 1227 | -- | -- |
| 59.61 | 0.36 | 7.81 | -- | 0.576 | 1.14 | -- | -- | 0.188 | 3.02 | 22 | 1716 | -- | -- |
| 128.36 | 0.529 | 7.73 | 0.237 | -- | -- | -- | -- | 0.559 | -- | -- | -- | -- | -- |
| 110.26 | 0.491 | 7.73 | -- | 0.584 | -- | -- | -- | 0.52 | 3 | -- | -- | -- | -- |
| 74.26 | 0.401 | 7.81 | -- | -- | 1.17 | -- | -- | 0.188 | -- | 22.3 | 1227 | -- | -- |
| 129.84 | 0.532 | 7.73 | -- | -- | -- | -- | -- | 0.532 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.01 | temperature | 25 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 3 | 56.18 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 6 | 56.71 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 11 | 56.87 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 13 | 56.98 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 31 | 57.83 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 8 |
| 36 | 57.91 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 4 |
| 37 | 57.92 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 4 |
| 156 | 58.68 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 474 | 60.43 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 585 | 60.88 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 597 | 60.97 | temperature | 10 | 1440 | > th | dose dependent | sin | 10 | NA |
| 635 | 61.13 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 641 | 61.15 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 878 | 62.23 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |