Os03g0377600 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0377600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.63	(0.0403)	R²	:	0.27
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	1.14	(0.0976)	R²_dE	:	0.226	R²_E	:	0.209
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.454	(0.0848)	R²_dN8	:	0.0606	R²_N8	:	0.0443
σ	:	0.757
deviance	:	264.26
__

_____

C
peak time of C	:	--
E
wheather	:	radiation
threshold	:	45.5
memory length	:	47
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	4.74
open length of G	:	14.8

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
246.86	0.738	3.64	-0.517	0.466	1.21	1.25	-1.01	0.423	17.1	30	78	4.19	14.1
249.73	0.736	3.65	-0.486	0.455	1.21	1.19	--	0.422	17.2	30.74	74	4.27	14.1
249.9	0.736	3.64	-0.52	0.429	1.23	--	-0.873	0.424	16.8	30	73	4.33	14
252.55	0.74	3.64	-0.484	0.445	1.2	--	--	0.433	16.7	30	73	4.37	13.9
255.49	0.744	3.64	-0.55	--	1.15	--	-0.613	0.397	--	47.54	52	4.68	14.8
318.13	0.836	3.63	-0.516	0.576	--	0.0184	--	0.399	13.7	--	--	--	--
318.13	0.835	3.63	-0.515	0.576	--	--	--	0.399	13.7	--	--	--	--
256.81	0.746	3.64	-0.534	--	1.15	--	--	0.398	--	48.73	52	4.65	14.8
258.69	0.749	3.63	--	0.431	1.2	--	--	0.467	16.5	29.69	73	4.4	13.9
338.33	0.859	3.64	-0.539	--	--	--	--	0.386	--	--	--	--	--
325.14	0.843	3.62	--	0.585	--	--	--	0.457	13.7	--	--	--	--
264.26	0.757	3.63	--	--	1.14	--	--	0.454	--	45.5	47	4.74	14.8
345.98	0.868	3.63	--	--	--	--	--	0.446	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	248.34	radiation	30	90	< th	dose dependent	rect.	4	14
6	253.83	radiation	20	90	< th	dose independent	rect.	4	14
9	256.23	humidity	60	30	> th	dose dependent	rect.	5	13
24	257.97	radiation	30	90	< th	dose dependent	sin	2	NA
42	260.38	radiation	40	270	< th	dose dependent	rect.	1	16
84	262.89	radiation	40	90	< th	dose dependent	rect.	11	22
91	263.17	radiation	40	90	< th	dose dependent	rect.	11	8
109	264.09	radiation	40	10	< th	dose dependent	rect.	11	22
112	264.19	humidity	70	10	> th	dose independent	rect.	5	13
115	264.46	humidity	70	90	> th	dose independent	rect.	4	14
117	264.47	radiation	40	270	< th	dose independent	rect.	1	15
134	264.86	humidity	70	30	> th	dose independent	rect.	2	16
153	265.49	radiation	20	10	< th	dose independent	rect.	10	23
170	265.81	radiation	20	90	< th	dose independent	rect.	11	20
191	266.49	radiation	20	90	< th	dose independent	rect.	11	8
194	266.55	radiation	20	90	< th	dose independent	rect.	23	20
210	266.89	radiation	30	270	< th	dose dependent	rect.	23	18
211	266.93	humidity	50	30	> th	dose dependent	rect.	2	17
212	266.94	radiation	40	90	< th	dose dependent	rect.	21	23
260	267.59	radiation	20	90	< th	dose independent	sin	2	NA
269	267.74	radiation	40	270	< th	dose independent	rect.	10	8
290	268.09	radiation	30	90	< th	dose dependent	rect.	23	20
291	268.10	radiation	20	30	< th	dose independent	rect.	21	23
315	268.59	radiation	10	90	> th	dose independent	rect.	7	9
319	268.62	radiation	1	90	> th	dose dependent	rect.	7	9
328	268.75	radiation	40	270	< th	dose independent	rect.	11	19
337	268.87	humidity	60	30	> th	dose dependent	sin	2	NA
345	268.99	radiation	20	90	< th	dose independent	rect.	13	18
357	269.17	radiation	10	90	> th	dose independent	sin	1	NA
378	269.32	radiation	1	90	> th	dose dependent	sin	2	NA
382	269.39	radiation	20	30	< th	dose independent	rect.	23	23
388	269.49	radiation	1	90	> th	dose dependent	rect.	7	7
420	269.92	radiation	40	10	< th	dose dependent	rect.	11	9
487	270.64	radiation	40	30	< th	dose dependent	rect.	23	23
565	271.15	radiation	1	90	> th	dose dependent	rect.	15	23
780	272.41	humidity	90	30	< th	dose dependent	rect.	19	21
910	273.13	radiation	1	90	> th	dose dependent	no	NA	NA
969	273.23	temperature	10	90	> th	dose dependent	rect.	19	9
984	273.36	radiation	40	90	< th	dose dependent	rect.	13	18