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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0377100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Expansin (Expansin2).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.35 (0.0266) R2 : 0.007
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.101 (0.0561) R2dN8 : 0.00904 R2N8 : 0.007
σ : 0.501
deviance : 115.43
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
107.17 0.486 3.31 0.246 0.524 -0.433 -1.86 1.87 0.163 11 0.14 101 -- --
111.04 0.495 3.33 0.108 0.378 -0.228 0.0386 -- 0.106 9.11 0.14 101 -- --
110.25 0.493 3.33 0.116 0.388 -0.237 -- 0.351 0.108 9.15 0.14 101 -- --
110.87 0.49 3.32 0.101 0.358 -0.252 -- -- 0.111 9.79 0.04534 90 -- --
113.66 0.497 3.34 0.0993 -- -0.0824 -- 0.354 0.111 -- 0.13 158 -- --
112.11 0.496 3.34 0.0942 0.235 -- -0.31 -- 0.105 5.83 -- -- -- --
112.33 0.496 3.34 0.0925 0.234 -- -- -- 0.106 6.11 -- -- -- --
112.49 0.494 3.36 0.121 -- -0.228 -- -- 0.0768 -- 5.174 645 -- --
111.16 0.491 3.33 -- 0.363 -0.248 -- -- 0.116 9.75 0.14 90 -- --
115.17 0.501 3.34 0.0992 -- -- -- -- 0.112 -- -- -- -- --
112.56 0.496 3.34 -- 0.236 -- -- -- 0.096 6.09 -- -- -- --
112.4 0.494 3.35 -- -- -0.281 -- -- 0.115 -- 4.61 679 -- --
115.43 0.501 3.35 -- -- -- -- -- 0.101 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 91.00 temperature 25.0 90 > th dose dependent rect. 2 2
2 91.27 temperature 25.0 90 > th dose independent rect. 1 3
3 91.99 temperature 25.0 90 > th dose dependent rect. 1 4
4 92.67 temperature 25.0 270 > th dose independent rect. 2 1
14 94.39 atmosphere 1005.0 10 > th dose dependent rect. 2 3
16 94.48 radiation 1.0 43200 < th dose dependent rect. 3 1
18 94.85 atmosphere 1005.0 30 > th dose dependent rect. 2 1
19 94.86 atmosphere 1005.0 30 > th dose independent rect. 2 1
26 95.01 wind 3.0 30 < th dose independent rect. 2 1
27 95.02 wind 5.0 30 < th dose dependent rect. 2 1
33 95.12 humidity 70.0 30 > th dose dependent rect. 2 1
34 95.13 humidity 80.0 30 > th dose independent rect. 2 1
35 95.13 humidity 50.0 30 > th dose dependent rect. 2 1
38 95.14 temperature 10.0 30 > th dose independent rect. 2 1
40 95.14 temperature 30.0 30 < th dose independent rect. 2 1
41 95.14 humidity 50.0 30 > th dose independent rect. 2 1
45 95.14 atmosphere 1010.0 30 < th dose independent rect. 2 1
47 95.14 radiation 1.0 30 < th dose independent rect. 2 1
52 95.14 precipitation 0.1 30 < th dose independent rect. 2 1
53 95.14 temperature 10.0 30 > th dose independent rect. 3 23
54 95.14 radiation 1.0 30 < th dose dependent rect. 2 1
59 95.14 precipitation 0.1 30 < th dose dependent rect. 2 1
64 95.39 radiation 1.0 4320 < th dose dependent rect. 3 1
78 95.58 wind 9.0 1440 < th dose independent rect. 3 1
79 95.58 temperature 10.0 1440 > th dose independent rect. 3 1
82 95.58 temperature 30.0 1440 < th dose independent rect. 3 1
86 95.58 humidity 50.0 1440 > th dose independent rect. 3 1
95 95.58 atmosphere 995.0 1440 > th dose independent rect. 3 1
96 95.58 radiation 1.0 1440 < th dose independent rect. 3 1
116 95.58 temperature 10.0 1440 > th dose independent rect. 4 23
124 95.63 atmosphere 1015.0 30 < th dose dependent rect. 2 1
126 95.80 temperature 30.0 30 < th dose dependent rect. 2 1
128 95.92 wind 1.0 30 > th dose independent rect. 2 1
147 96.54 atmosphere 1000.0 30 > th dose independent rect. 3 23
192 97.63 precipitation 0.1 30 < th dose independent rect. 3 23
193 97.63 precipitation 0.1 30 < th dose dependent rect. 3 23
196 97.92 wind 9.0 30 < th dose independent rect. 3 23
241 100.72 humidity 50.0 30 > th dose independent rect. 3 23
257 101.33 atmosphere 1005.0 30 > th dose independent rect. 2 3
261 101.78 wind 3.0 30 < th dose dependent rect. 2 3
309 102.78 humidity 90.0 270 < th dose independent rect. 1 1
310 102.82 wind 3.0 30 < th dose independent rect. 2 3
324 103.15 atmosphere 1000.0 30 > th dose independent rect. 5 21
333 103.27 temperature 25.0 720 > th dose dependent rect. 5 3
366 104.15 precipitation 0.1 30 < th dose independent rect. 2 3
367 104.15 precipitation 0.1 30 < th dose dependent rect. 2 3
375 104.24 humidity 80.0 30 > th dose independent rect. 2 3
379 104.25 temperature 10.0 30 > th dose independent rect. 2 3
381 104.25 temperature 30.0 30 < th dose independent rect. 2 3
382 104.25 humidity 50.0 30 > th dose independent rect. 2 3
386 104.25 atmosphere 1010.0 30 < th dose independent rect. 2 3
388 104.25 radiation 1.0 30 < th dose independent rect. 2 3
393 104.25 wind 9.0 30 < th dose independent rect. 5 21
394 104.25 temperature 10.0 30 > th dose independent rect. 5 21
395 104.25 radiation 10.0 30 < th dose dependent rect. 2 3
403 104.30 temperature 10.0 30 > th dose dependent rect. 5 21
404 104.31 temperature 25.0 720 > th dose independent rect. 5 3
405 104.31 precipitation 0.1 30 < th dose independent rect. 5 21
406 104.31 precipitation 0.1 30 < th dose dependent rect. 5 21
407 104.32 temperature 30.0 30 < th dose independent rect. 3 23
431 104.39 radiation 1.0 10 < th dose dependent rect. 2 12
450 104.50 temperature 25.0 1440 < th dose independent rect. 1 1
451 104.50 wind 9.0 1440 < th dose independent rect. 3 3
452 104.50 temperature 10.0 1440 > th dose independent rect. 3 3
455 104.50 temperature 30.0 1440 < th dose independent rect. 3 3
459 104.50 humidity 50.0 1440 > th dose independent rect. 3 3
468 104.50 atmosphere 995.0 1440 > th dose independent rect. 3 3
469 104.50 radiation 20.0 1440 < th dose independent rect. 3 3
478 104.50 temperature 10.0 1440 > th dose independent rect. 6 21
486 104.54 humidity 50.0 30 > th dose independent rect. 5 21
496 104.63 radiation 1.0 10 < th dose independent rect. 2 12
507 104.68 radiation 1.0 10 < th dose dependent rect. 2 10
509 104.69 wind 9.0 720 < th dose dependent rect. 2 1
529 104.84 humidity 90.0 90 < th dose independent rect. 1 4
531 104.89 atmosphere 1000.0 10 > th dose independent rect. 14 12
534 104.91 radiation 1.0 10 < th dose independent rect. 2 10
548 105.01 temperature 10.0 30 > th dose dependent rect. 3 23
560 105.10 wind 9.0 1440 < th dose independent rect. 21 1
562 105.10 radiation 40.0 30 < th dose independent rect. 14 12
564 105.10 wind 1.0 10 > th dose independent rect. 5 23
567 105.14 humidity 50.0 30 > th dose dependent rect. 2 3
571 105.17 radiation 20.0 43200 < th dose dependent rect. 21 1
598 105.27 humidity 60.0 10 > th dose independent rect. 14 12
601 105.29 temperature 10.0 1440 > th dose independent rect. 21 1
604 105.29 temperature 30.0 1440 < th dose independent rect. 21 1
608 105.29 humidity 50.0 1440 > th dose independent rect. 21 1
614 105.29 atmosphere 995.0 1440 > th dose independent rect. 21 1
615 105.29 radiation 1.0 1440 < th dose independent rect. 21 1
636 105.29 temperature 10.0 1440 > th dose independent rect. 22 23
641 105.34 wind 3.0 30 > th dose independent rect. 20 1
643 105.34 temperature 25.0 10 > th dose dependent rect. 16 19
653 105.38 temperature 25.0 30 > th dose independent rect. 20 1
660 105.41 atmosphere 1005.0 30 > th dose dependent rect. 20 1
664 105.45 humidity 80.0 30 > th dose independent rect. 20 1
666 105.46 temperature 20.0 30 > th dose dependent rect. 20 1
667 105.48 atmosphere 1015.0 30 < th dose independent rect. 3 23
670 105.49 wind 3.0 30 < th dose dependent rect. 2 6
674 105.50 radiation 40.0 10 < th dose dependent rect. 14 12
679 105.52 atmosphere 1000.0 10 > th dose independent rect. 16 10
683 105.53 wind 1.0 30 > th dose dependent rect. 20 1
685 105.54 humidity 90.0 30 < th dose independent rect. 20 1
686 105.55 humidity 80.0 4320 < th dose dependent rect. 1 1
689 105.57 atmosphere 1005.0 30 > th dose independent rect. 20 1
692 105.58 wind 9.0 10 < th dose independent rect. 14 12
699 105.62 atmosphere 1000.0 10 > th dose independent rect. 2 12
700 105.62 precipitation 0.1 10 < th dose independent rect. 2 12
702 105.62 precipitation 0.1 10 < th dose dependent rect. 2 12
703 105.63 wind 5.0 30 < th dose independent rect. 20 1
704 105.63 humidity 50.0 30 > th dose dependent rect. 20 1
710 105.64 temperature 10.0 10 > th dose independent rect. 2 12
712 105.64 temperature 10.0 10 > th dose independent rect. 14 12
714 105.64 atmosphere 1015.0 10 < th dose independent rect. 2 12
718 105.65 temperature 10.0 30 > th dose independent rect. 20 1
720 105.65 temperature 30.0 30 < th dose independent rect. 20 1
721 105.65 humidity 50.0 30 > th dose independent rect. 20 1
725 105.65 atmosphere 1010.0 30 < th dose independent rect. 20 1
727 105.65 radiation 1.0 30 < th dose independent rect. 20 1
732 105.65 precipitation 0.1 30 < th dose independent rect. 20 1
733 105.65 temperature 10.0 30 > th dose independent rect. 21 23
734 105.65 radiation 1.0 30 < th dose dependent rect. 20 1
739 105.65 precipitation 0.1 30 < th dose dependent rect. 20 1
744 105.69 temperature 25.0 10 > th dose dependent rect. 22 13
745 105.70 atmosphere 995.0 720 > th dose independent rect. 14 1
746 105.70 temperature 25.0 10 > th dose dependent rect. 24 11
747 105.71 temperature 30.0 30 < th dose independent rect. 5 21
752 105.73 wind 9.0 30 < th dose dependent rect. 20 1
758 105.75 radiation 1.0 90 < th dose dependent rect. 1 23
761 105.76 precipitation 0.1 10 < th dose independent rect. 14 12
764 105.76 precipitation 0.1 10 < th dose dependent rect. 14 12
773 105.81 radiation 1.0 30 < th dose dependent rect. 2 19
780 105.83 atmosphere 995.0 720 > th dose independent rect. 3 23
781 105.83 atmosphere 995.0 30 > th dose dependent rect. 5 21
804 105.90 precipitation 0.1 720 < th dose independent rect. 14 1
805 105.90 precipitation 0.1 720 < th dose dependent rect. 14 1
810 105.92 wind 1.0 10 > th dose independent rect. 21 14
813 105.93 radiation 10.0 10 < th dose independent rect. 14 12
814 105.93 humidity 90.0 30 < th dose dependent rect. 20 1
815 105.93 atmosphere 1015.0 30 < th dose dependent rect. 20 1
817 105.94 atmosphere 1000.0 720 > th dose independent rect. 3 6
821 105.95 humidity 90.0 10 < th dose independent rect. 3 2
823 105.95 wind 1.0 30 > th dose independent rect. 5 21
824 105.95 wind 9.0 30 < th dose independent rect. 21 23
827 105.96 temperature 30.0 720 < th dose independent rect. 17 10
829 105.96 radiation 10.0 10 < th dose independent rect. 16 10
830 105.96 wind 9.0 10 < th dose independent rect. 2 12
848 106.00 atmosphere 1000.0 720 > th dose independent rect. 21 18
856 106.01 temperature 10.0 720 > th dose independent rect. 14 1
857 106.01 atmosphere 1015.0 720 < th dose independent rect. 14 1
861 106.01 temperature 10.0 720 > th dose independent rect. 15 23
867 106.03 wind 9.0 10 < th dose independent rect. 16 10
869 106.04 temperature 10.0 1440 > th dose independent rect. 3 12
872 106.04 temperature 10.0 1440 > th dose independent rect. 15 12
878 106.05 precipitation 0.1 720 < th dose independent rect. 2 1
880 106.05 atmosphere 995.0 720 > th dose independent rect. 15 23
882 106.05 precipitation 0.1 720 < th dose dependent rect. 2 1
885 106.06 precipitation 0.1 10 < th dose independent rect. 2 14
887 106.06 precipitation 0.1 10 < th dose dependent rect. 2 14
888 106.06 temperature 25.0 30 > th dose dependent rect. 14 21
889 106.07 wind 1.0 720 > th dose independent rect. 14 1
894 106.09 temperature 30.0 30 < th dose dependent rect. 20 1
897 106.09 radiation 40.0 10 < th dose dependent rect. 16 10
898 106.10 radiation 30.0 10 < th dose independent rect. 16 10
904 106.13 temperature 10.0 10 > th dose independent rect. 16 10
906 106.13 temperature 10.0 10 > th dose independent rect. 2 14
908 106.13 atmosphere 1015.0 10 < th dose independent rect. 2 14
913 106.15 humidity 50.0 10 > th dose independent rect. 16 10
927 106.20 precipitation 0.1 10 < th dose independent rect. 16 10
928 106.20 temperature 25.0 30 > th dose dependent sin 9 NA
930 106.20 precipitation 0.1 10 < th dose dependent rect. 16 10
932 106.21 wind 1.0 10 > th dose independent rect. 21 23
946 106.24 temperature 25.0 10 > th dose dependent rect. 6 5
948 106.25 wind 9.0 720 < th dose independent rect. 14 1
956 106.27 atmosphere 995.0 10 > th dose independent rect. 2 14
961 106.28 radiation 1.0 30 < th dose independent rect. 2 19
962 106.29 atmosphere 995.0 30 > th dose independent rect. 21 23
963 106.29 humidity 90.0 10 < th dose dependent rect. 4 1
965 106.30 temperature 30.0 10 < th dose independent rect. 14 12
971 106.31 precipitation 0.1 720 < th dose independent rect. 15 8
972 106.31 humidity 50.0 30 > th dose independent rect. 2 12
974 106.31 precipitation 0.1 720 < th dose dependent rect. 15 8