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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0374500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.39 (0.027) R2 : 0.000465
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0262 (0.0569) R2dN8 : 6e-04 R2N8 : 0.000465
σ : 0.509
deviance : 119
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
110.43 0.494 3.43 -0.295 0.219 -1.14 -0.687 4.91 -0.00421 6.72 1000 719 -- --
113.75 0.501 3.38 -0.0257 0.211 -0.252 -0.722 -- -0.0145 6.19 1000 719 -- --
111.51 0.492 3.43 -0.336 0.217 -1.25 -- 5.53 -0.00122 7.53 1000 768 -- --
114.39 0.498 3.38 -0.0428 0.224 -0.309 -- -- -0.0153 7.06 1000 734 -- --
114.07 0.497 3.44 -0.337 -- -1.27 -- 5.6 0.00154 -- 999.9 737 -- --
115.5 0.504 3.38 0.0195 0.209 -- -0.731 -- -0.0314 6.2 -- -- -- --
116.66 0.506 3.38 0.0131 0.21 -- -- -- -0.0281 7.1 -- -- -- --
116.88 0.504 3.38 -0.0335 -- -0.293 -- -- -0.00758 -- 1000 734 -- --
114.41 0.498 3.37 -- 0.219 -0.299 -- -- -0.00334 7.22 1000 716 -- --
118.99 0.51 3.38 0.0172 -- -- -- -- -0.0243 -- -- -- -- --
116.67 0.505 3.38 -- 0.21 -- -- -- -0.0295 7.09 -- -- -- --
116.9 0.504 3.38 -- -- -0.29 -- -- -0.000595 -- 1000 734 -- --
119 0.509 3.39 -- -- -- -- -- -0.0262 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 107.31 humidity 80 14400 < th dose dependent rect. 3 6
3 107.41 wind 1 10 < th dose dependent rect. 14 4
7 107.43 humidity 80 14400 < th dose dependent rect. 7 1
10 107.52 wind 1 10 < th dose independent rect. 14 2
12 107.52 wind 1 10 < th dose dependent rect. 14 2
17 107.90 humidity 70 14400 > th dose independent rect. 8 1
23 108.17 humidity 70 14400 > th dose independent rect. 4 5
24 108.17 humidity 70 14400 > th dose independent rect. 2 7
29 108.18 humidity 70 14400 > th dose independent rect. 6 3
35 108.47 humidity 70 14400 < th dose independent rect. 8 1
36 108.73 humidity 50 10 < th dose independent rect. 15 2
57 108.80 humidity 50 10 < th dose dependent rect. 15 2
83 108.88 humidity 50 90 < th dose dependent rect. 15 2
161 108.94 humidity 50 90 < th dose independent rect. 14 3
199 109.00 humidity 70 14400 < th dose independent rect. 6 3
216 109.10 temperature 30 30 > th dose independent rect. 15 19
239 109.15 humidity 50 90 < th dose dependent sin 12 NA
242 109.17 atmosphere 1000 720 > th dose independent rect. 21 22
275 109.29 humidity 90 1440 > th dose independent rect. 2 2
276 109.36 atmosphere 1000 720 > th dose independent rect. 7 18
279 109.45 humidity 50 90 < th dose independent sin 12 NA
280 109.46 atmosphere 1000 720 > th dose independent rect. 3 23
285 109.49 atmosphere 1000 720 > th dose independent rect. 5 21
288 109.58 temperature 30 30 > th dose independent rect. 15 4
320 109.60 temperature 25 90 > th dose dependent rect. 14 21
323 109.63 atmosphere 1000 720 > th dose independent rect. 14 19
324 109.64 wind 5 14400 < th dose independent rect. 11 1
325 109.64 atmosphere 1000 720 > th dose independent rect. 13 13
330 109.67 atmosphere 1000 720 > th dose independent rect. 21 20
331 109.69 humidity 50 4320 < th dose independent rect. 12 1
333 109.71 atmosphere 1000 720 > th dose independent rect. 10 16
337 109.73 atmosphere 1000 720 > th dose independent rect. 14 11
339 109.76 wind 1 14400 < th dose dependent rect. 6 1
342 109.79 temperature 20 90 < th dose dependent rect. 8 1
345 109.80 wind 3 14400 > th dose independent rect. 10 1
348 109.81 wind 1 14400 < th dose independent rect. 6 1
350 109.82 temperature 20 90 < th dose independent rect. 8 1
352 109.84 atmosphere 1000 720 > th dose independent rect. 23 16
353 109.84 atmosphere 1000 720 > th dose independent rect. 10 23
354 109.85 temperature 30 30 > th dose independent rect. 15 1
357 109.86 temperature 30 90 > th dose independent sin 12 NA
360 109.87 temperature 20 10 < th dose independent rect. 8 2
367 109.87 temperature 20 10 < th dose dependent rect. 8 2
373 109.88 atmosphere 1000 720 > th dose independent rect. 7 8
410 109.93 temperature 20 270 < th dose dependent rect. 6 1
422 109.99 atmosphere 1000 720 > th dose independent rect. 14 8
430 110.03 atmosphere 1000 720 > th dose independent rect. 13 22
437 110.06 atmosphere 1000 720 > th dose independent rect. 3 16
438 110.06 atmosphere 1000 720 > th dose independent rect. 23 18
446 110.11 humidity 50 270 < th dose dependent rect. 12 4
448 110.12 humidity 50 270 < th dose dependent rect. 12 6
470 110.15 atmosphere 1000 720 > th dose independent rect. 18 23
472 110.16 temperature 15 720 < th dose independent rect. 23 1
484 110.16 temperature 15 720 < th dose dependent rect. 23 1
497 110.17 wind 5 14400 < th dose independent rect. 10 5
516 110.18 atmosphere 1000 720 > th dose independent rect. 13 6
518 110.18 atmosphere 1000 720 > th dose independent rect. 5 14
523 110.19 temperature 30 270 < th dose independent sin 17 NA
529 110.22 atmosphere 1000 720 > th dose independent sin 18 NA
537 110.24 temperature 30 90 < th dose independent sin 14 NA
539 110.24 atmosphere 1000 720 > th dose independent rect. 5 17
541 110.25 temperature 30 90 < th dose independent sin 12 NA
546 110.25 atmosphere 1010 10 > th dose dependent rect. 10 1
559 110.29 humidity 50 270 < th dose independent rect. 12 4
562 110.29 humidity 50 270 < th dose independent rect. 12 6
594 110.29 wind 5 14400 < th dose dependent rect. 10 2
597 110.30 wind 5 14400 > th dose independent rect. 10 5
648 110.33 atmosphere 1000 720 < th dose independent rect. 4 21
702 110.40 atmosphere 1000 720 < th dose independent rect. 22 22
721 110.41 humidity 90 1440 < th dose independent rect. 1 4
739 110.43 atmosphere 1000 720 > th dose independent no NA NA
740 110.43 atmosphere 1000 720 < th dose independent no NA NA
743 110.43 atmosphere 1000 720 < th dose independent rect. 22 19
746 110.43 atmosphere 1000 720 > th dose independent rect. 23 23
747 110.43 atmosphere 1000 720 < th dose independent rect. 11 23
748 110.43 atmosphere 1000 720 < th dose independent rect. 19 23
776 110.45 atmosphere 1000 720 < th dose independent rect. 17 23
786 110.47 wind 1 14400 > th dose independent rect. 6 1
819 110.49 atmosphere 1000 720 > th dose independent rect. 16 9
881 110.52 atmosphere 1000 720 > th dose independent rect. 21 18
939 110.55 atmosphere 1000 720 < th dose independent sin 2 NA
978 110.57 humidity 80 1440 > th dose dependent rect. 3 1
990 110.58 atmosphere 1000 720 > th dose independent rect. 23 20
993 110.58 atmosphere 1000 720 > th dose independent rect. 7 23