Os03g0372500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to TA11 protein (Fragment).
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Os03g0372500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to TA11 protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.37 | 0.178 | 8.63 | 1.09 | 0.161 | 0.415 | -0.0364 | -0.601 | 0.0986 | 5.02 | 24.26 | 233 | -- | -- |
| 14.66 | 0.178 | 8.64 | 1.01 | 0.162 | 0.558 | -0.214 | -- | 0.0669 | 4.89 | 22.56 | 218 | -- | -- |
| 14.37 | 0.177 | 8.63 | 1.09 | 0.164 | 0.412 | -- | -0.608 | 0.0961 | 5.06 | 24.2 | 225 | -- | -- |
| 14.73 | 0.179 | 8.64 | 1.01 | 0.161 | 0.553 | -- | -- | 0.0701 | 5.49 | 22.79 | 166 | -- | -- |
| 15.04 | 0.181 | 8.61 | 1.18 | -- | 0.475 | -- | -0.908 | 0.147 | -- | 28.61 | 263 | -- | -- |
| 18 | 0.199 | 8.66 | 0.887 | 0.208 | -- | -0.258 | -- | -0.00311 | 4.38 | -- | -- | -- | -- |
| 18.17 | 0.2 | 8.65 | 0.889 | 0.208 | -- | -- | -- | -0.00171 | 4.62 | -- | -- | -- | -- |
| 15.98 | 0.186 | 8.63 | 1.02 | -- | 0.503 | -- | -- | 0.111 | -- | 27.12 | 264 | -- | -- |
| 38.82 | 0.292 | 8.67 | -- | 0.215 | 0.122 | -- | -- | -0.0883 | 4.76 | 22.79 | 166 | -- | -- |
| 20.46 | 0.211 | 8.66 | 0.897 | -- | -- | -- | -- | 0.00373 | -- | -- | -- | -- | -- |
| 39.01 | 0.292 | 8.68 | -- | 0.224 | -- | -- | -- | -0.101 | 4.51 | -- | -- | -- | -- |
| 41.2 | 0.299 | 8.67 | -- | -- | 0.159 | -- | -- | -0.0682 | -- | 29.1 | 254 | -- | -- |
| 41.7 | 0.301 | 8.68 | -- | -- | -- | -- | -- | -0.0958 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.15 | temperature | 20 | 90 | > th | dose independent | rect. | 8 | 22 |
| 2 | 14.15 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 6 | 14.23 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 15 | 14.28 | temperature | 25 | 270 | < th | dose dependent | rect. | 14 | 21 |
| 16 | 14.28 | temperature | 25 | 10 | < th | dose dependent | rect. | 4 | 23 |
| 17 | 14.29 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 21 |
| 45 | 14.37 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 22 |
| 72 | 14.44 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 87 | 14.47 | temperature | 20 | 270 | > th | dose independent | rect. | 9 | 19 |
| 109 | 14.50 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 112 | 14.51 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 20 |
| 113 | 14.51 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 176 | 14.58 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 177 | 14.58 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 180 | 14.59 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 188 | 14.59 | temperature | 25 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 189 | 14.59 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 192 | 14.59 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 215 | 14.61 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 228 | 14.63 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 22 |
| 237 | 14.64 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 14 |
| 244 | 14.65 | temperature | 20 | 90 | > th | dose independent | rect. | 11 | 18 |
| 255 | 14.65 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 257 | 14.66 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 22 |
| 267 | 14.67 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 10 |
| 270 | 14.67 | humidity | 90 | 14400 | > th | dose dependent | sin | 6 | NA |
| 317 | 14.70 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 318 | 14.70 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 391 | 14.74 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 12 |
| 420 | 14.75 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 442 | 14.76 | radiation | 20 | 4320 | < th | dose independent | rect. | 1 | 5 |
| 513 | 14.78 | temperature | 20 | 270 | < th | dose independent | rect. | 9 | 23 |
| 527 | 14.79 | humidity | 90 | 14400 | < th | dose independent | sin | 8 | NA |
| 534 | 14.79 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 572 | 14.80 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 15 |
| 575 | 14.80 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 16 |
| 598 | 14.81 | humidity | 90 | 14400 | > th | dose independent | sin | 8 | NA |
| 609 | 14.81 | temperature | 20 | 270 | < th | dose independent | rect. | 15 | 21 |
| 613 | 14.81 | temperature | 20 | 270 | < th | dose independent | rect. | 17 | 22 |
| 614 | 14.81 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 23 |
| 620 | 14.81 | humidity | 90 | 14400 | > th | dose dependent | rect. | 16 | 12 |
| 655 | 14.82 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 691 | 14.83 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 692 | 14.83 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 738 | 14.84 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 754 | 14.84 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 8 |
| 784 | 14.85 | temperature | 25 | 270 | < th | dose dependent | sin | 10 | NA |
| 785 | 14.85 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 804 | 14.86 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 851 | 14.87 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 852 | 14.87 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 5 |
| 873 | 14.88 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 897 | 14.88 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 900 | 14.89 | wind | 9 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 901 | 14.89 | radiation | 1 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 902 | 14.89 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 903 | 14.89 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 5 |
| 910 | 14.89 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 953 | 14.90 | radiation | 1 | 14400 | < th | dose independent | sin | 10 | NA |
| 957 | 14.90 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 983 | 14.90 | temperature | 25 | 10 | < th | dose dependent | rect. | 10 | 16 |
| 985 | 14.90 | temperature | 25 | 90 | < th | dose dependent | rect. | 9 | 17 |