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Os03g0371400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0349) R2 : 0.846
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.93 (0.104) R2dC : 0.412 R2C : 0.697
β3 : -2.27 (0.135) R2dE : 0.146 R2E : 0.433
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.156 (0.0735) R2dN8 : 0.00188 R2N8 : 0.00187
σ : 0.654
deviance : 197.29
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C
peak time of C : 13.5
E
wheather : radiation
threshold : 0.6247
memory length : 122
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 21.6
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
180.63 0.631 11.5 0.702 3.08 -2.21 -1.3 -0.666 0.231 13.7 0.5872 114 21 --
180.73 0.626 11.5 0.719 3.02 -2.2 -1.06 -- 0.226 13.6 0.7372 115 21.4 --
184.97 0.633 11.5 0.72 3.01 -2.23 -- 0.668 0.213 13.6 0.8394 115 21.4 --
185.07 0.634 11.5 0.675 2.91 -2.23 -- -- 0.221 13.5 0.7428 119 21.8 --
211.48 0.677 11.5 0.789 -- -3.9 -- 0.923 0.189 -- 13.57 69 2.99 --
264.38 0.762 11.4 0.741 4.12 -- -0.705 -- 0.348 14.3 -- -- -- --
266.21 0.764 11.4 0.722 4.12 -- -- -- 0.344 14.3 -- -- -- --
206.53 0.669 11.5 0.597 -- -3.96 -- -- 0.156 -- 1.711 189 3.71 --
197.29 0.654 11.5 -- 2.93 -2.27 -- -- 0.156 13.5 0.6247 122 21.6 --
1273.58 1.67 11.5 0.548 -- -- -- -- 0.243 -- -- -- -- --
279.93 0.783 11.5 -- 4.11 -- -- -- 0.263 14.3 -- -- -- --
217.62 0.687 11.5 -- -- -3.88 -- -- 0.165 -- 1.63 182 3.69 --
1281.5 1.67 11.5 -- -- -- -- -- 0.182 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 177.29 precipitation 0.1 270 < th dose independent rect. 3 22
2 177.29 precipitation 0.1 270 < th dose dependent rect. 3 22
3 178.85 radiation 1.0 90 < th dose independent rect. 1 5
4 179.17 temperature 10.0 10 > th dose dependent rect. 6 20
7 179.83 radiation 10.0 90 < th dose dependent rect. 1 5
11 181.10 temperature 20.0 270 > th dose independent rect. 1 2
12 181.57 temperature 20.0 90 > th dose independent rect. 1 5
13 181.62 temperature 20.0 10 > th dose independent rect. 2 4
14 181.72 humidity 50.0 270 > th dose dependent rect. 1 2
16 181.93 temperature 10.0 270 > th dose independent rect. 1 2
18 181.93 temperature 30.0 270 < th dose independent rect. 1 2
19 181.93 humidity 50.0 270 > th dose independent rect. 1 2
22 181.93 atmosphere 995.0 270 > th dose independent rect. 1 2
23 181.93 atmosphere 1010.0 270 < th dose independent rect. 1 2
25 181.93 radiation 1.0 270 < th dose independent rect. 1 2
30 181.93 temperature 10.0 270 > th dose independent rect. 3 22
31 181.93 radiation 1.0 270 < th dose dependent rect. 1 2
36 182.01 wind 9.0 270 < th dose independent rect. 1 2
38 182.03 precipitation 0.1 270 < th dose independent rect. 1 2
39 182.03 precipitation 0.1 270 < th dose dependent rect. 1 2
43 182.70 radiation 30.0 10 < th dose dependent rect. 2 4
52 183.18 wind 9.0 270 < th dose independent rect. 3 22
53 183.28 humidity 50.0 90 > th dose dependent rect. 1 5
54 183.32 precipitation 0.1 90 < th dose independent rect. 6 19
55 183.32 precipitation 0.1 90 < th dose dependent rect. 6 19
57 183.43 humidity 50.0 10 > th dose dependent rect. 2 4
60 183.54 precipitation 0.1 10 < th dose independent rect. 6 20
61 183.54 precipitation 0.1 10 < th dose dependent rect. 6 20
67 183.87 wind 9.0 10 < th dose independent rect. 6 20
71 184.10 radiation 1.0 90 < th dose independent rect. 1 10
75 184.22 wind 9.0 10 < th dose independent rect. 2 4
76 184.22 temperature 10.0 10 > th dose independent rect. 2 4
78 184.22 temperature 30.0 10 < th dose independent rect. 2 4
79 184.22 humidity 50.0 10 > th dose independent rect. 2 4
82 184.22 atmosphere 995.0 10 > th dose independent rect. 2 4
83 184.22 atmosphere 1010.0 10 < th dose independent rect. 2 4
85 184.22 radiation 20.0 10 < th dose independent rect. 2 4
88 184.22 temperature 10.0 10 > th dose independent rect. 6 20
90 184.31 wind 9.0 90 < th dose independent rect. 6 19
94 184.53 radiation 1.0 90 < th dose dependent sin 3 NA
97 184.60 temperature 10.0 270 > th dose dependent rect. 1 2
100 184.69 wind 9.0 90 < th dose independent rect. 1 5
101 184.69 temperature 10.0 90 > th dose independent rect. 1 5
103 184.69 temperature 30.0 90 < th dose independent rect. 1 5
104 184.69 humidity 50.0 90 > th dose independent rect. 1 5
107 184.69 atmosphere 995.0 90 > th dose independent rect. 1 5
108 184.69 atmosphere 1010.0 90 < th dose independent rect. 1 5
113 184.69 temperature 10.0 90 > th dose independent rect. 6 19
123 184.83 radiation 1.0 90 < th dose dependent rect. 1 10
167 186.52 temperature 10.0 10 > th dose dependent rect. 2 4
169 186.63 atmosphere 1015.0 270 < th dose dependent rect. 1 2
171 186.73 wind 9.0 1440 < th dose independent rect. 3 4
172 186.73 temperature 10.0 1440 > th dose independent rect. 3 4
175 186.73 temperature 30.0 1440 < th dose independent rect. 3 4
179 186.73 humidity 50.0 1440 > th dose independent rect. 3 4
184 186.73 atmosphere 995.0 1440 > th dose independent rect. 3 4
185 186.73 radiation 40.0 1440 < th dose independent rect. 3 4
189 186.73 temperature 10.0 1440 > th dose independent rect. 7 20
192 186.77 precipitation 0.1 90 < th dose independent rect. 1 5
193 186.77 precipitation 0.1 90 < th dose dependent rect. 1 5
207 186.79 temperature 10.0 270 > th dose independent rect. 4 20
222 187.01 wind 9.0 270 < th dose independent rect. 4 20
241 187.74 radiation 1.0 90 > th dose independent sin 4 NA
245 187.89 radiation 1.0 90 < th dose independent sin 4 NA
259 188.24 atmosphere 995.0 10 > th dose independent rect. 6 20
299 188.71 atmosphere 1015.0 10 < th dose dependent rect. 2 4
334 188.93 wind 9.0 270 < th dose dependent rect. 1 2
381 189.83 wind 9.0 10 < th dose dependent rect. 2 4
392 190.33 atmosphere 1015.0 90 < th dose independent rect. 6 19
399 190.50 atmosphere 1015.0 10 < th dose independent rect. 6 20
403 190.53 precipitation 0.1 270 < th dose independent rect. 14 10
404 190.53 precipitation 0.1 270 < th dose dependent rect. 14 10
409 190.63 wind 9.0 90 < th dose dependent rect. 1 5
419 191.05 wind 1.0 270 > th dose independent rect. 1 2
454 191.49 temperature 10.0 270 > th dose independent rect. 14 10
455 191.49 temperature 10.0 270 > th dose independent rect. 24 14
456 191.49 atmosphere 995.0 270 > th dose independent rect. 24 14
458 191.51 atmosphere 1015.0 270 < th dose independent rect. 24 14
461 191.65 radiation 40.0 90 < th dose independent rect. 6 19
462 191.71 wind 9.0 270 < th dose independent rect. 14 10
497 191.99 wind 1.0 30 > th dose independent rect. 6 20
539 192.54 wind 9.0 270 < th dose independent rect. 24 14
540 192.56 humidity 50.0 10 > th dose independent rect. 6 20
635 193.74 radiation 1.0 270 < th dose dependent rect. 22 22
683 194.21 radiation 40.0 270 < th dose independent rect. 19 14
696 194.54 precipitation 0.1 270 < th dose independent rect. 19 14
697 194.54 precipitation 0.1 270 < th dose dependent rect. 19 14
716 194.94 atmosphere 1015.0 270 < th dose independent rect. 4 20
717 194.94 radiation 1.0 270 < th dose dependent rect. 23 20
757 195.26 temperature 10.0 270 > th dose dependent rect. 5 4
758 195.28 atmosphere 995.0 270 > th dose independent rect. 4 20
856 196.18 wind 7.0 90 < th dose independent rect. 6 5
861 196.21 wind 1.0 270 > th dose independent rect. 14 10
870 196.36 radiation 40.0 270 < th dose independent rect. 14 10
872 196.39 radiation 1.0 270 < th dose dependent sin 9 NA
885 196.48 atmosphere 995.0 10 > th dose dependent rect. 2 4
933 196.74 temperature 10.0 270 > th dose dependent rect. 4 6
939 196.80 precipitation 0.1 270 < th dose independent rect. 24 14
940 196.80 precipitation 0.1 270 < th dose dependent rect. 24 14
952 196.90 temperature 15.0 90 > th dose independent rect. 6 5
975 197.07 radiation 1.0 90 > th dose independent rect. 4 7
999 197.13 radiation 40.0 90 < th dose independent rect. 6 5